Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000540

Physical Location & Seq

Genomic Coordinates Reverse (-)

30897633 .. 30900399

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG271200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2610 bp

ATGGAGACGCTGTTAGGTCCTATGGTTCAAGTTGTACTGGACAAGGTATGTACGGCCATGTTGAACAGAGCTCAAGTCATAGCAAACTTTGAAGACCAGTTTGAGCAGCTGAAGAAAGGGTTAACAACTACGAATGACCTACTTGCCAAAGCGATGGATCTTCAGAGCAAGTATGACGAGGTCATGGGTGCCTTGAGCCAACTAAGAGAAGTAATTGATAAAGCTGATGATGTATTGACAGATTGCCTGGTTCGAGTTACATACAAGGAAAATAAGTCCTCACTACGTTTCTGGTTTCATGATCCGGGATTTAAACTTCGAGTGGGCAAGCAGTTGAAAGATATCAATACGAAAATGGACGTGGCACGTAATACCTTGGGAGAACATTTGAAAATTGCAAACTCTACAGCGCCTGATAGAACCCATAACGGTGAAAGCCATGAAAACCAGAGTGAAAGTACTTGGGAATTCATGTCTCGGAATTACGACCCGGGTGTGACCTATGGATTGGATAATTACATCAAAAGTTTGAAAGAGTGGATGCTTGGCAGTACCAAGGGGAAACTCGACTTTGCTGGCATTGTGGGGATGGGGGGTTTGGGCAAAACCACCATTGCCAAGATGTTCTTTAATGATCCTGAAGTTGTATCTCACTTTGACAAGATGATCTGGGTGCCTGTTTCACGGAACTTTAGTGCGCAGCGGATTCTGAAGTGCATGCTGGAAAAGGCAAATCTGCAAGCACCGGATGTTTTGGAATCTGATAACATGTTCACCAGCCTTAAACGACTTAAAGATCAAGCTTATCTCATCGTCATGGATGATGTGTGGCATAATCCCAATTTATATAGTTTCTGGACTAACCTCCGCGACTCCCTACCAAAAACAGTTAAAAAAAGCAGCTGCATCATAATTACTACTAGGAACATAGAGGTTGCCAATCGTTTGGTGGACCAAGACTCACTAAAATTGCAGCCCGATACTCTGAATGAAAAGGACAGCTGGGCTTTGTTCAGCAGAGTTGCATTTCAATCAACCGAGGTTACCGAGCTGTTCAAGGAGGCAGGACGGGCTATCGTGAATAAATGTGGTGGGCTTCCACTGGCAATCAAGACAGTAGGAGGGTATTTGGCCAAGGAGAGTCTTTTTAAGTGGACCGAGACCATAGAAAAATTCCATTCATTGGCTATCAATAATGAAGAAACAGAATCACTTATGCTTTGTCTACAAGTGAGCTACAATGAACTTCCAACGGAAATGAAGCAGTGCCTATTGTGTCTCTCCGTTTACCCTGAAGACGTTGAGATACATGCTGATCAGCTACTTCACTGGTGGTTTGTAGAGGGCCTCATCCGGAGCAAGAAAGGCAACTCTAAAACAGCACTAGAATTGGGCTATGAATATCTGGCAAAACTAGCCAACAGATGCCTATTGGAAGTTGCGGAAACCCGAGGCTATGATGGAAGAATTTATAAGTTCAAAATACACGATATGATACGGGAATTAATAATCAGAATTGCAGAAAAAGAGAAATTTTGCAACTTCAACGAAGAATGTAGGCAGATACAGATTGAAGAATCTCGGTGGTTATGTATCACTGAAGATATGGCAGCTGAGGTTGAGACGCCGTGGATCAAAAGCAATTCAAGCAATTCAAAGTTGAGGGCACTTTTACTGATGTCAAGCCCTTCAATGATTGACTTCACCAAGAAATTTGTGCTGTTAGAGTCACTCAGGGTATTGGACTTTTCTTACTCCAAGTTAGATGTGATTATTGTTGAAGATAGCAGCACAGCCTCTTCAGGGATTCGTGTAGAGAAACTCTTCGACATGATCACTTCTCTGAAACGCCTAGCATGTCTAAACCTCAGTGGAGTTCAGAAACTATTAGAAGTGCCATCTTCAATTGAGAAACTCCTTAACCTCCAGGTTTTGGTATTGAATGGATGCATAAATTTAGGCAAGATACACGCCAAAATCACAAGTTTGAAGAGGCTTGTTGTCTTGGACATTGGAACATGTCCCCTTGAGCACTTGCCTCGGGACCTAGGGAGACTCTCTGATCTGCAAGAACTCTCTGGATTTAGGGTGGTAAGTCGGGCAAAGACATGGGGTTGCACCCTTCTTCAGCTTGGAAGACTAAAGCAGCTAAGAGTTCTTCGAATTACAATAGGTAATGTGGCTGAAATCTCTGAAGAAGAAAAGAAGAGCCTATCAAGTCTCCAGAACCTCAAGGTTCTAGCTATTGATGCTGCAGATACTAACAAACAAGAAAATCTGGAAATGATAGATGAGCTGGAGTTGCCTCCAAAGATAGAGGAGCTGTATCTCAGGAATTACCGCTCCCGAAAAATGCCAAACTGGTTTAGTCCCTTGAGGCTTCCTAAATTGCATTATCTTTCTATTGAGGATTGCGACGTTGAAAGCCTAAAGGACAACTACAGTTGGAAAATTGAAGGTTTGTATTTAAAATTGTTAGAGATGTTAAAGGTAGACTGGAATGACTTGAAGAGAACCATGCCAGCATTACGCTACATGGAGATTAGCAAATGTTCCAACTTGAGAAACTTTCCAATCGATGTTGTCAAGAAAGCGGTTTGGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

869

Amino Acids

99.56

Weight (kDa)

7.45

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	8 - 99	8.4e-10	Rx N-terminal domain
NB-ARC	PF00931	175 - 346	1.6e-33	NB-ARC domain
WHD_DRP	PF23559	429 - 503	3.1e-14	Disease resistance protein Winged helix domain
LRR_14	PF23598	576 - 803	3.7e-23	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	710 - 812	3.4e-11	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50950 AT3G50950
fragaria_vesca	FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica	MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica	Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis	pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis	RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata	RLG00000017001
rosa_multiflora	Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa	Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha	Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana	Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1473
Acc16I	TGCGCA	1 cut(s)	699
AccB1I	GGYRCC	2 cut(s)	188, 673
AccB7I	CCANNNNNTGG	2 cut(s)	1183, 1933
AccBSI	CCGCTC	1 cut(s)	2343
AccI	GTMKAC	2 cut(s)	1225, 2493
AccII	CGCG	1 cut(s)	870
AccIII	TCCGGA	1 cut(s)	1353
AciI	CCGC	5 cut(s)	703, 868, 1442, 2341, 2594
AclWI	GGATC	4 cut(s)	165, 296, 629, 1640
AcoI	YGGCCR	2 cut(s)	54, 1131
AcsI	RAATTY	6 cut(s)	467, 1172, 1467, 1532, 1712, 1954
AcuI	CTGAAG	9 cut(s)	131, 146, 660, 731, 1314, 1620, 1785, 2111, 2214
AcyI	GRCGYC	1 cut(s)	1625
AfaI	GTAC	4 cut(s)	36, 52, 460, 553
AfiI	CCNNNNNNNGG	3 cut(s)	1183, 1803, 1933
AflIII	ACRYGT	2 cut(s)	768, 2018
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	246, 1926
Alw21I	GWGCWC	2 cut(s)	73, 2034
Alw26I	GTCTC	6 cut(s)	480, 1154, 1283, 1616, 2047, 2225
AlwI	GGATC	4 cut(s)	165, 296, 629, 1640
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	3 cut(s)	490, 1449, 2040
Aor13HI	TCCGGA	1 cut(s)	1353
AoxI	GGCC	3 cut(s)	54, 1131, 1345
ApeKI	GCWGC	9 cut(s)	106, 700, 900, 903, 973, 1610, 1788, 2146, 2252
ApoI	RAATTY	6 cut(s)	467, 1172, 1467, 1532, 1712, 1954
AseI	ATTAAT	1 cut(s)	1505
Asp700I	GAANNNNTTC	1 cut(s)	1823
AspA2I	CCTAGG	1 cut(s)	2047
AspLEI	GCGC	2 cut(s)	412, 700
AspS9I	GGNCC	5 cut(s)	17, 952, 1155, 1345, 2044
AsuC2I	CCSGG	3 cut(s)	306, 491, 492
AsuHPI	GGTGA	3 cut(s)	443, 766, 1696
AsuII	TTCGAA	1 cut(s)	2161
AvaI	CYCGRG	3 cut(s)	490, 1449, 2040
AvaII	GGWCC	4 cut(s)	17, 952, 1155, 2044
AvrII	CCTAGG	1 cut(s)	2047
BaeGI	GKGCMC	1 cut(s)	1669
BalI	TGGCCA	1 cut(s)	1133
BanI	GGYRCC	2 cut(s)	188, 673
BanII	GRGCYC	1 cut(s)	73
BbsI	GAAGAC	3 cut(s)	99, 1302, 2143
Bbv12I	GWGCWC	2 cut(s)	73, 2034
BbvCI	CCTCAGC	1 cut(s)	1614
BbvI	GCAGC	9 cut(s)	118, 712, 890, 912, 985, 1622, 1800, 2158, 2239
BccI	CCATC	4 cut(s)	148, 583, 1454, 1906
BceAI	ACGGC	2 cut(s)	69, 1612
BcgI	CGANNNNNNTGC	2 cut(s)	2021, 2055
BciT130I	CCWGG	2 cut(s)	248, 1928
BclI	TGATCA	2 cut(s)	1315, 1833
BcnI	CCSGG	3 cut(s)	306, 491, 492
BcoDI	GTCTC	6 cut(s)	480, 1154, 1283, 1616, 2047, 2225
BfaI	CTAG	6 cut(s)	921, 1385, 1415, 1853, 2048, 2240
BfmI	CTRYAG	3 cut(s)	405, 2253, 2440
BfoI	RGCGCY	1 cut(s)	413
BisI	GCNGC	9 cut(s)	107, 701, 901, 904, 974, 1611, 1789, 2147, 2253
BlnI	CCTAGG	1 cut(s)	2047
BlsI	GCNGC	9 cut(s)	108, 702, 902, 905, 975, 1612, 1790, 2148, 2254
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	5 cut(s)	248, 306, 491, 492, 1928
Bme18I	GGWCC	4 cut(s)	17, 952, 1155, 2044
BmeT110I	CYCGRG	3 cut(s)	490, 1449, 2040
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	5 cut(s)	17, 952, 1155, 1345, 2044
BmiI	GGNNCC	3 cut(s)	190, 675, 2045
BmrFI	CCNGG	5 cut(s)	248, 306, 491, 492, 1928
BmsI	GCATC	5 cut(s)	531, 915, 1415, 1937, 2239
BpiI	GAAGAC	3 cut(s)	99, 1302, 2143
BpmI	CTGGAG	3 cut(s)	1910, 2207, 2318
Bpu10I	CCTNAGC	1 cut(s)	1614
Bpu14I	TTCGAA	1 cut(s)	2161
BpuEI	CTTGAG	6 cut(s)	57, 214, 2048, 2216, 2395, 2581
BpuMI	CCSGG	3 cut(s)	306, 491, 492
Bsa29I	ATCGAT	1 cut(s)	2577
BsaAI	YACGTR	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	1625
BsaI	GGTCTC	1 cut(s)	1154
BsaJI	CCNNGG	9 cut(s)	375, 490, 555, 1038, 1134, 1450, 1628, 2039, 2047
BsaWI	WCCGGW	2 cut(s)	745, 1353
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	1183, 1803, 1933
Bse1I	ACTGG	6 cut(s)	42, 97, 1107, 1334, 2366, 2501
Bse3DI	GCAATG	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	1353
BseBI	CCWGG	2 cut(s)	248, 1928
BseCI	ATCGAT	1 cut(s)	2577
BseDI	CCNNGG	9 cut(s)	375, 490, 555, 1038, 1134, 1450, 1628, 2039, 2047
BseGI	GGATG	6 cut(s)	546, 594, 754, 826, 1350, 1952
BseLI	CCNNNNNNNGG	3 cut(s)	1183, 1803, 1933
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	4 cut(s)	1605, 1747, 1882, 2344
BseNI	ACTGG	6 cut(s)	42, 97, 1107, 1334, 2366, 2501
BseRI	GAGGAG	1 cut(s)	2333
BseSI	GKGCMC	1 cut(s)	1669
BseXI	GCAGC	9 cut(s)	118, 712, 890, 912, 985, 1622, 1800, 2158, 2239
BseYI	CCCAGC	1 cut(s)	1002
Bsh1236I	CGCG	1 cut(s)	870
BshFI	GGCC	3 cut(s)	56, 1133, 1347
BshNI	GGYRCC	2 cut(s)	188, 673
BshVI	ATCGAT	1 cut(s)	2577
BsiHKAI	GWGCWC	2 cut(s)	73, 2034
BsiHKCI	CYCGRG	3 cut(s)	490, 1449, 2040
BsiSI	CCGG	4 cut(s)	305, 491, 746, 1354
BslFI	GGGAC	3 cut(s)	2007, 2057, 2355
BslI	CCNNNNNNNGG	3 cut(s)	1183, 1803, 1933
BsmAI	GTCTC	6 cut(s)	480, 1154, 1283, 1616, 2047, 2225
BsmBI	CGTCTC	1 cut(s)	1616
BsmFI	GGGAC	3 cut(s)	2007, 2057, 2355
BsnI	GGCC	3 cut(s)	56, 1133, 1347
Bso31I	GGTCTC	1 cut(s)	1154
BsoBI	CYCGRG	3 cut(s)	490, 1449, 2040
Bsp119I	TTCGAA	1 cut(s)	2161
Bsp1286I	GDGCHC	3 cut(s)	73, 1669, 2034
Bsp13I	TCCGGA	1 cut(s)	1353
Bsp143I	GATC	9 cut(s)	157, 301, 634, 666, 796, 1315, 1632, 1833, 2062
BspACI	CCGC	5 cut(s)	703, 868, 1442, 2341, 2594
BspANI	GGCC	3 cut(s)	56, 1133, 1347
BspCNI	CTCAG	4 cut(s)	1606, 1746, 1881, 2343
BspDI	ATCGAT	1 cut(s)	2577
BspEI	TCCGGA	1 cut(s)	1353
BspFNI	CGCG	1 cut(s)	870
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	190, 675, 2045
BspMAI	CTGCAG	1 cut(s)	2257
BspPI	GGATC	4 cut(s)	165, 296, 629, 1640
BspQI	GCTCTTC	1 cut(s)	2201
BspT104I	TTCGAA	1 cut(s)	2161
BspT107I	GGYRCC	2 cut(s)	188, 673
BspTNI	GGTCTC	1 cut(s)	1154
BsrBI	CCGCTC	1 cut(s)	2343
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	6 cut(s)	42, 97, 1107, 1334, 2366, 2501
BssECI	CCNNGG	9 cut(s)	375, 490, 555, 1038, 1134, 1450, 1628, 2039, 2047
BssMI	GATC	9 cut(s)	157, 301, 634, 666, 796, 1315, 1632, 1833, 2062
BssNI	GRCGYC	1 cut(s)	1625
BssT1I	CCWWGG	4 cut(s)	375, 555, 1134, 2047
Bst2UI	CCWGG	2 cut(s)	248, 1928
Bst4CI	ACNGT	4 cut(s)	431, 889, 1117, 2444
Bst6I	CTCTTC	5 cut(s)	1804, 1829, 1985, 2201, 2504
BstACI	GRCGYC	1 cut(s)	1625
BstBAI	YACGTR	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	2161
BstC8I	GCNNGC	5 cut(s)	329, 577, 719, 741, 2523
BstDEI	CTNAG	6 cut(s)	203, 1614, 1733, 1868, 2150, 2330
BstDSI	CCRYGG	1 cut(s)	1628
BstEII	GGTNACC	1 cut(s)	1042
BstF5I	GGATG	6 cut(s)	546, 594, 754, 826, 1350, 1952
BstFNI	CGCG	1 cut(s)	870
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	2 cut(s)	412, 700
BstKTI	GATC	9 cut(s)	160, 304, 637, 669, 799, 1318, 1635, 1836, 2065
BstMAI	GTCTC	6 cut(s)	480, 1154, 1283, 1616, 2047, 2225
BstMBI	GATC	9 cut(s)	157, 301, 634, 666, 796, 1315, 1632, 1833, 2062
BstMWI	GCNNNNNNNGC	6 cut(s)	1070, 1365, 1415, 1647, 2249, 2302
BstNI	CCWGG	2 cut(s)	248, 1928
BstNSI	RCATGY	5 cut(s)	721, 772, 1313, 1860, 2022
BstPI	GGTNACC	1 cut(s)	1042
BstSCI	CCNGG	5 cut(s)	246, 304, 489, 490, 1926
BstSFI	CTRYAG	3 cut(s)	405, 2253, 2440
BstSLI	GKGCMC	1 cut(s)	1669
BstUI	CGCG	1 cut(s)	870
BstV1I	GCAGC	9 cut(s)	118, 712, 890, 912, 985, 1622, 1800, 2158, 2239
BstV2I	GAAGAC	3 cut(s)	99, 1302, 2143
BstX2I	RGATCY	1 cut(s)	157
BstXI	CCANNNNNNTGG	2 cut(s)	154, 946
BstYI	RGATCY	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	2577
BsuRI	GGCC	3 cut(s)	56, 1133, 1347
BsuTUI	ATCGAT	1 cut(s)	2577
BtgI	CCRYGG	1 cut(s)	1628
BtgZI	GCGATG	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	6 cut(s)	546, 594, 754, 826, 1350, 1952
BtsI	GCAGTG	1 cut(s)	1271
BtsIMutI	CAGTG	5 cut(s)	1100, 1271, 1327, 1596, 1876
Cac8I	GCNNGC	5 cut(s)	329, 577, 719, 741, 2523
CaiI	CAGNNNCTG	1 cut(s)	413
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	2 cut(s)	412, 700
Cfr13I	GGNCC	5 cut(s)	17, 952, 1155, 1345, 2044
Cfr9I	CCCGGG	1 cut(s)	490
ClaI	ATCGAT	1 cut(s)	2577
CseI	GACGC	2 cut(s)	16, 1633
Csp6I	GTAC	4 cut(s)	35, 51, 459, 552
CviQI	GTAC	4 cut(s)	35, 51, 459, 552
DdeI	CTNAG	6 cut(s)	203, 1614, 1733, 1868, 2150, 2330
DpnI	GATC	9 cut(s)	159, 303, 636, 668, 798, 1317, 1634, 1835, 2064
DpnII	GATC	9 cut(s)	157, 301, 634, 666, 796, 1315, 1632, 1833, 2062
DraI	TTTAAA	2 cut(s)	313, 2469
EaeI	YGGCCR	2 cut(s)	54, 1131
Eam1104I	CTCTTC	5 cut(s)	1804, 1829, 1985, 2201, 2504
EarI	CTCTTC	5 cut(s)	1804, 1829, 1985, 2201, 2504
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	4 cut(s)	375, 555, 1134, 2047
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	1154
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	4 cut(s)	17, 952, 1155, 2044
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	9 cut(s)	131, 146, 660, 731, 1314, 1620, 1785, 2111, 2214
Eco88I	CYCGRG	3 cut(s)	490, 1449, 2040
Eco91I	GGTNACC	1 cut(s)	1042
EcoICRI	GAGCTC	1 cut(s)	71
EcoO109I	RGGNCCY	3 cut(s)	17, 1345, 2044
EcoO65I	GGTNACC	1 cut(s)	1042
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	246, 1926
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	4 cut(s)	375, 555, 1134, 2047
EcoT22I	ATGCAT	1 cut(s)	1952
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	4 cut(s)	375, 555, 1134, 2047
Esp3I	CGTCTC	1 cut(s)	1616
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	3 cut(s)	2007, 2057, 2355
FbaI	TGATCA	2 cut(s)	1315, 1833
FblI	GTMKAC	2 cut(s)	1225, 2493
Fnu4HI	GCNGC	9 cut(s)	107, 701, 901, 904, 974, 1611, 1789, 2147, 2253
FokI	GGATG	6 cut(s)	553, 601, 761, 833, 1337, 1959
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	9 cut(s)	107, 701, 901, 904, 974, 1611, 1789, 2147, 2253
FspBI	CTAG	6 cut(s)	921, 1385, 1415, 1853, 2048, 2240
FspI	TGCGCA	1 cut(s)	699
GlaI	GCGC	2 cut(s)	411, 699
GluI	GCNGC	9 cut(s)	107, 701, 901, 904, 974, 1611, 1789, 2147, 2253
GsaI	CCCAGC	1 cut(s)	1006
GsuI	CTGGAG	3 cut(s)	1910, 2207, 2318
HaeII	RGCGCY	1 cut(s)	413
HaeIII	GGCC	3 cut(s)	56, 1133, 1347
HapII	CCGG	4 cut(s)	305, 491, 746, 1354
HgaI	GACGC	2 cut(s)	16, 1633
HhaI	GCGC	2 cut(s)	412, 700
Hin1I	GRCGYC	1 cut(s)	1625
Hin6I	GCGC	2 cut(s)	410, 698
HinP1I	GCGC	2 cut(s)	410, 698
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	801
HpaI	GTTAAC	1 cut(s)	123
HpaII	CCGG	4 cut(s)	305, 491, 746, 1354
HphI	GGTGA	3 cut(s)	443, 766, 1696
Hpy166II	GTNNAC	7 cut(s)	123, 774, 952, 1155, 1226, 1288, 2494
Hpy8I	GTNNAC	7 cut(s)	123, 774, 952, 1155, 1226, 1288, 2494
Hpy99I	CGWCG	1 cut(s)	2420
HpyAV	CCTTC	3 cut(s)	1698, 2132, 2450
HpyCH4III	ACNGT	4 cut(s)	431, 889, 1117, 2444
HpyCH4IV	ACGT	5 cut(s)	286, 360, 367, 1299, 2418
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1070, 1365, 1415, 1647, 2249, 2302
HpyF3I	CTNAG	6 cut(s)	203, 1614, 1733, 1868, 2150, 2330
HpySE526I	ACGT	5 cut(s)	286, 360, 367, 1299, 2418
Hsp92I	GRCGYC	1 cut(s)	1625
HspAI	GCGC	2 cut(s)	410, 698
Kpn2I	TCCGGA	1 cut(s)	1353
Ksp22I	TGATCA	2 cut(s)	1315, 1833
KspAI	GTTAAC	1 cut(s)	123
Kzo9I	GATC	9 cut(s)	157, 301, 634, 666, 796, 1315, 1632, 1833, 2062
LguI	GCTCTTC	1 cut(s)	2201
LmnI	GCTCC	3 cut(s)	1356, 2320, 2348
Lsp1109I	GCAGC	9 cut(s)	118, 712, 890, 912, 985, 1622, 1800, 2158, 2239
LweI	GCATC	5 cut(s)	531, 915, 1415, 1937, 2239
MaeI	CTAG	6 cut(s)	921, 1385, 1415, 1853, 2048, 2240
MaeII	ACGT	5 cut(s)	286, 360, 367, 1299, 2418
MaeIII	GTNAC	4 cut(s)	256, 496, 1042, 1728
MalI	GATC	9 cut(s)	159, 303, 636, 668, 798, 1317, 1634, 1835, 2064
MbiI	CCGCTC	1 cut(s)	2343
MboI	GATC	9 cut(s)	157, 301, 634, 666, 796, 1315, 1632, 1833, 2062
MfeI	CAATTG	1 cut(s)	1905
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	3 cut(s)	73, 1669, 2034
MlsI	TGGCCA	1 cut(s)	1133
MluNI	TGGCCA	1 cut(s)	1133
MlyI	GAGTC	5 cut(s)	866, 953, 1150, 1736, 2049
MmeI	TCCRAC	3 cut(s)	1274, 2426, 2580
Mox20I	TGGCCA	1 cut(s)	1133
Mph1103I	ATGCAT	1 cut(s)	1952
MroI	TCCGGA	1 cut(s)	1353
MroXI	GAANNNNTTC	1 cut(s)	1823
MscI	TGGCCA	1 cut(s)	1133
MslI	CAYNNNNRTG	2 cut(s)	429, 815
Msp20I	TGGCCA	1 cut(s)	1133
MspA1I	CMGCKG	5 cut(s)	109, 703, 903, 1002, 1613
MspI	CCGG	4 cut(s)	305, 491, 746, 1354
MspR9I	CCNGG	5 cut(s)	248, 306, 491, 492, 1928
MunI	CAATTG	1 cut(s)	1905
MvaI	CCWGG	2 cut(s)	248, 1928
MvnI	CGCG	1 cut(s)	870
MwoI	GCNNNNNNNGC	6 cut(s)	1070, 1365, 1415, 1647, 2249, 2302
NciI	CCSGG	3 cut(s)	306, 491, 492
NdeII	GATC	9 cut(s)	157, 301, 634, 666, 796, 1315, 1632, 1833, 2062
NlaIV	GGNNCC	3 cut(s)	190, 675, 2045
NmuCI	GTSAC	2 cut(s)	496, 1728
NsbI	TGCGCA	1 cut(s)	699
NsiI	ATGCAT	1 cut(s)	1952
NspI	RCATGY	5 cut(s)	721, 772, 1313, 1860, 2022
NspV	TTCGAA	1 cut(s)	2161
PaeI	GCATGC	1 cut(s)	721
PagI	TCATGA	1 cut(s)	298
PciI	ACATGT	2 cut(s)	768, 2018
PciSI	GCTCTTC	1 cut(s)	2201
PdmI	GAANNNNTTC	1 cut(s)	1823
PfeI	GAWTC	5 cut(s)	706, 758, 1208, 1577, 1807
PflFI	GACNNNGTC	1 cut(s)	179
PflMI	CCANNNNNTGG	2 cut(s)	1183, 1933
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	9 cut(s)	108, 702, 902, 905, 975, 1612, 1790, 2148, 2254
PleI	GAGTC	5 cut(s)	866, 953, 1149, 1735, 2049
PpsI	GAGTC	5 cut(s)	866, 953, 1149, 1735, 2049
Ppu21I	YACGTR	1 cut(s)	368
PpuMI	RGGWCCY	2 cut(s)	17, 2044
PscI	ACATGT	2 cut(s)	768, 2018
PshBI	ATTAAT	1 cut(s)	1505
PsiI	TTATAA	1 cut(s)	1473
Psp124BI	GAGCTC	1 cut(s)	73
Psp5II	RGGWCCY	2 cut(s)	17, 2044
Psp6I	CCWGG	2 cut(s)	246, 1926
PspEI	GGTNACC	1 cut(s)	1042
PspFI	CCCAGC	1 cut(s)	1002
PspGI	CCWGG	2 cut(s)	246, 1926
PspN4I	GGNNCC	3 cut(s)	190, 675, 2045
PspPI	GGNCC	5 cut(s)	17, 952, 1155, 1345, 2044
PspPPI	RGGWCCY	2 cut(s)	17, 2044
PstI	CTGCAG	1 cut(s)	2257
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	4 cut(s)	109, 903, 1002, 1613
RsaI	GTAC	4 cut(s)	36, 52, 460, 553
RsaNI	GTAC	4 cut(s)	35, 51, 459, 552
RseI	CAYNNNNRTG	2 cut(s)	429, 815
SacI	GAGCTC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	2201
SatI	GCNGC	9 cut(s)	107, 701, 901, 904, 974, 1611, 1789, 2147, 2253
Sau3AI	GATC	9 cut(s)	157, 301, 634, 666, 796, 1315, 1632, 1833, 2062
Sau96I	GGNCC	5 cut(s)	17, 952, 1155, 1345, 2044
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	5 cut(s)	866, 953, 1150, 1736, 2049
ScrFI	CCNGG	5 cut(s)	248, 306, 491, 492, 1928
SduI	GDGCHC	3 cut(s)	73, 1669, 2034
SfaNI	GCATC	5 cut(s)	531, 915, 1415, 1937, 2239
SfcI	CTRYAG	3 cut(s)	405, 2253, 2440
SfuI	TTCGAA	1 cut(s)	2161
SinI	GGWCC	4 cut(s)	17, 952, 1155, 2044
SmaI	CCCGGG	1 cut(s)	492
SmiMI	CAYNNNNRTG	2 cut(s)	429, 815
SmlI	CTYRAG	6 cut(s)	72, 193, 2027, 2231, 2374, 2560
SmoI	CTYRAG	6 cut(s)	72, 193, 2027, 2231, 2374, 2560
SphI	GCATGC	1 cut(s)	721
SsiI	CCGC	5 cut(s)	703, 868, 1442, 2341, 2594
SspMI	CTAG	6 cut(s)	921, 1385, 1415, 1853, 2048, 2240
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	5 cut(s)	246, 304, 489, 490, 1926
StyI	CCWWGG	4 cut(s)	375, 555, 1134, 2047
TaaI	ACNGT	4 cut(s)	431, 889, 1117, 2444
TaiI	ACGT	5 cut(s)	289, 363, 370, 1302, 2421
TaqI	TCGA	6 cut(s)	253, 319, 567, 1827, 2161, 2577
TaqII	GACCGA	1 cut(s)	1172
TatI	WGTACW	2 cut(s)	34, 458
TfiI	GAWTC	5 cut(s)	706, 758, 1208, 1577, 1807
TscAI	CASTG	5 cut(s)	1107, 1271, 1334, 1603, 1876
TseFI	GTSAC	2 cut(s)	496, 1728
TseI	GCWGC	9 cut(s)	106, 700, 900, 903, 973, 1610, 1788, 2146, 2252
Tsp45I	GTSAC	2 cut(s)	496, 1728
TspDTI	ATGAA	9 cut(s)	287, 456, 460, 1005, 1170, 1212, 1257, 1274, 1413
TspGWI	ACGGA	3 cut(s)	700, 1268, 1273
TspMI	CCCGGG	1 cut(s)	490
TspRI	CASTG	5 cut(s)	1107, 1271, 1334, 1603, 1876
Tth111I	GACNNNGTC	1 cut(s)	179
Van91I	CCANNNNNTGG	2 cut(s)	1183, 1933
VpaK11BI	GGWCC	4 cut(s)	17, 952, 1155, 2044
VspI	ATTAAT	1 cut(s)	1505
XapI	RAATTY	6 cut(s)	467, 1172, 1467, 1532, 1712, 1954
XceI	RCATGY	5 cut(s)	721, 772, 1313, 1860, 2022
XcmI	CCANNNNNNNNNTGG	1 cut(s)	946
XmaI	CCCGGG	1 cut(s)	490
XmaJI	CCTAGG	1 cut(s)	2047
XmiI	GTMKAC	2 cut(s)	1225, 2493
XmnI	GAANNNNTTC	1 cut(s)	1823
XspI	CTAG	6 cut(s)	921, 1385, 1415, 1853, 2048, 2240
ZrmI	AGTACT	1 cut(s)	460
Zsp2I	ATGCAT	1 cut(s)	1952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.