Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000540

Physical Location & Seq

Genomic Coordinates Reverse (-)

28960932 .. 28961404

Gene Structure 473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATTAAACTAAGATTATTTATTACCACACAAAACACATTAATTGCACCTAATAATTTTTATTCAACCATACCTAACATTGAAACTTTGGGAAAGTTAGACGGGCTTAAGATGCCTCCAAATCTCAGGGAGCTGTATGTAAGGAATTATCATTCCAACACAATGCCCAACTGGTTTCATCCGAATGTGCTTTCTGGATTGCAGTATCTCTGTGTTGAGAATTGTGACATTGCGAAACTGACCAGTGATCAGTCCACTTGGAAACATGTTGAGGGTTTGTGTTTGAAGTTGCTGAACTATGAGGAAGATGGGGATAACTTGAGGAAAATTATGCCTGCACTCCGCTACATGGAGATTCGCCATTGTTCAAAGTTCAAAAATCTTCCCCGCGAGGTTGAAGAGGAAGGAGTTTGGAGAAAGAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

143

Amino Acids

16.71

Weight (kDa)

8.67

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_R13L1-DRL21	PF25019	33 - 79	2.6e-08	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50950 AT3G50950
fragaria_vesca	FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica	MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica	Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis	pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis	RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata	RLG00000017001
rosa_multiflora	Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa	Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha	Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana	Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	390
AciI	CCGC	2 cut(s)	343, 388
AfiI	CCNNNNNNNGG	1 cut(s)	349
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	6 cut(s)	66, 83, 286, 369, 376, 398
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AseI	ATTAAT	1 cut(s)	41
BccI	CCATC	1 cut(s)	302
BclI	TGATCA	1 cut(s)	247
BfrI	CTTAAG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	2 cut(s)	176, 243
Bse3DI	GCAATG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	176, 243
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	2 cut(s)	343, 388
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	390
BspTI	CTTAAG	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	176, 243
BssMI	GATC	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	393
BstAFI	CTTAAG	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	11, 125
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	269
BstUI	CGCG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	336
CviAII	CATG	2 cut(s)	266, 349
CviJI	RGCY	2 cut(s)	106, 133
CviKI_1	RGCY	2 cut(s)	106, 133
DdeI	CTNAG	2 cut(s)	11, 125
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
FaeI	CATG	2 cut(s)	269, 352
FaiI	YATR	6 cut(s)	71, 138, 267, 300, 332, 350
FatI	CATG	2 cut(s)	265, 348
FauI	CCCGC	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	247
FokI	GGATG	1 cut(s)	165
Hin1II	CATG	2 cut(s)	269, 352
HinfI	GANTC	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	1 cut(s)	255
HpyAV	CCTTC	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	47, 202, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	2 cut(s)	11, 125
Hsp92II	CATG	2 cut(s)	269, 352
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	5 cut(s)	112, 157, 180, 256, 348
LweI	GCATC	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	3 cut(s)	317, 374, 410
MluCI	AATT	6 cut(s)	42, 55, 145, 220, 327, 424
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	126, 265, 295, 315, 385, 394
MseI	TTAA	3 cut(s)	6, 41, 108
MslI	CAYNNNNRTG	1 cut(s)	183
MspCI	CTTAAG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	112
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	269, 352
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	269
PciI	ACATGT	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	355
PscI	ACATGT	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	6, 41, 108
Sau3AI	GATC	1 cut(s)	247
SetI	ASST	4 cut(s)	52, 76, 135, 396
SfaNI	GCATC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	2 cut(s)	107, 319
SmoI	CTYRAG	2 cut(s)	107, 319
Sse9I	AATT	6 cut(s)	42, 55, 145, 220, 327, 424
SsiI	CCGC	2 cut(s)	343, 388
TasI	AATT	6 cut(s)	42, 55, 145, 220, 327, 424
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	3 cut(s)	6, 41, 108
Tru9I	TTAA	3 cut(s)	6, 41, 108
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	107
VspI	ATTAAT	1 cut(s)	41
XceI	RCATGY	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.