Rroxscaffold_1G00075100

NB-ARC domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
95857702 .. 95861392
3691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075100.1

Sequence Viewer

Length: 1068 bp
ATGGTGCGGGAACTGATAATATTGATTGCAGAAGAGGAGGAATTTTGCGGCTTCGACGAACGAGGCAGACAAGAATTGACAGCAAAGACTAGGTGGTTATGCTTTATTGATGAAATGGATGAAAAGTCCTTGAAACGTAGTTCAAAGCTTAGGGCATTGTTGCTGATGTCAAGCCGCGGATTTGACTTTGAAAGGAATTCGGGGTTTTTGCTGCGATCCCTCAGAATGTTGGATTTATCAAACTGCACTGTGGATGAGCATTGTGTGGAGGATCTCTTCAGCTGGATCAGCTCCCTTAAGCGCTTAGCATCTCTGAACTTAAGTGGTATTCAAGCCCTGAAAGAAGTGCCCTCTTCAATTCATAAACTCCTCAACCTCCAACTTTTGCTTTTAACAGGTTGCAGCAATCTAGTAAAAATACACCCTTCCATCACCAATTTGAAGAAGTTGATTATTTTGGACCTAGGCAGGTGTCCAATCCAATACTTGCCTCAGGGATTGGGAAGGCTTTCTTATCTTCAAGAGCTCTCCGGATTCAAGGTCGTGAGTCAGCCTAGAAAGCCAAGTTTCCGGCTTCTTGAGATTAGGGAATTGATCAACCTGAGAGTACTGCGAATACATGTAAGCAGTACCACAGTTATCGCAGACAATGAACTTGATGTCCTTTCTCAGCTTAGAAGGCTCAATGTTCTAGCTATTGATGCAGAAGATTGTAGAAATAACAATGTTTTGGAAATGCTAGAAGGGCTGACCCCTCCTCCAAGCCTCCAAGAGCTATATCTTAGGAATTACAAGAAGGAAACTTTGCCCAACTGGGTTAATCCTGGACAACTTTCACGATTGCAGTATCTTTGCATCGAGAATGGAGACCTTGTCAAGCTAGGCAGTGGTCAAACCACCTGGAATCTTGAAGGCCTATGTCTCAAGTACTTGATGAGGCTAGAGGTAGACTGGAAGGACTTGGAGAAGGATATGCCTGTACTTCACTACATGGAGATCAGTCATTGTTACAACTTGACGGATTTCCCTTGTTCGGTTATGGAACCTGGGGTCTGGAGAAAGCATTAA

Protein Analysis

355

Amino Acids

40.94

Weight (kDa)

6.67

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 72 - 287 1.4e-28 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 207 - 293 2.7e-09 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50950 AT3G50950
fragaria_vesca FvH4_1g12710 FvH4_1g12710 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820 FvH4_3g00820
malus_domestica MD02G1141100.v1.1 MD10G1333100.v1.1
prunus_persica Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.4G009300_v2.0.a1 Prupe.6G150700_v2.0.a1 Prupe.7G160100_v2.0.a1 Prupe.7G160100_v2.0.a1
pyrus_communis pycom02g11110 pycom10g28240 pycom10g28340 pycom10g28360 pycom10g28450
rosa_chinensis RchiOBHm_Chr2g0100711 RchiOBHm_Chr3g0485861 RchiOBHm_Chr4g0391451 RchiOBHm_Chr4g0391591 RchiOBHm_Chr4g0391601 RchiOBHm_Chr4g0391681 RchiOBHm_Chr5g0001141 RchiOBHm_Chr5g0001221
rosa_laevigata RLG00000017001
rosa_multiflora Rmu_co8260007.1_g000001 Rmu_co8260103.1_g000001 Rmu_co8519155.1_g000001 Rmu_sc0000060.1_g000050 Rmu_sc0000255.1_g000036 Rmu_sc0001174.1_g000023 Rmu_sc0001174.1_g000025 Rmu_sc0001659.1_g000009 Rmu_sc0001706.1_g000009 Rmu_sc0001706.1_g000024 Rmu_sc0001706.1_g000035 Rmu_sc0004189.1_g000018 Rmu_sc0004189.1_g000030 Rmu_sc0004862.1_g000002 Rmu_sc0004876.1_g000038 Rmu_sc0023741.1_g000004
rosa_roxburghii Rroxscaffold_1G00075100 Rroxscaffold_1G00075160 Rroxscaffold_1G00075210 Rroxscaffold_5G00337160 Rroxscaffold_5G00386590 Rroxscaffold_6G00396300
rosa_rugosa Rorug03G0336200 Rorug03G0336300 Rorug04G0389400
rosa_samantha Rh2AG140400 Rh2BG144100 Rh2CG145400 Rh2DG144900 Rh3AG271200 Rh4AG038000 Rh4AG038700 Rh4BG032000 Rh4BG032800 Rh4CG041100 Rh4CG041300 Rh4DG035500 Rh4DG035600 Rh5AG008800 Rh5AG009100 Rh5BG010900 Rh5BG011500 Rh5BG011600 Rh5BG012000 Rh5CG009400 Rh5CG010000 Rh5DG009800
rosa_wichuraiana Rw2G010940 Rw4G002950 Rw4G002990 Rw4G003000 Rw5G000880 Rw5G000950 Rw5G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 459
AccI GTMKAC 1 cut(s) 948
AccII CGCG 1 cut(s) 177
AccIII TCCGGA 1 cut(s) 530
AciI CCGC 4 cut(s) 7, 48, 175, 177
AclWI GGATC 3 cut(s) 210, 279, 293
AcsI RAATTY 2 cut(s) 41, 196
AcuI CTGAAG 1 cut(s) 262
AfaI GTAC 4 cut(s) 609, 631, 929, 981
AfeI AGCGCT 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 1033
AflII CTTAAG 2 cut(s) 296, 319
AflIII ACRYGT 1 cut(s) 619
AgsI TTSAA 9 cut(s) 133, 144, 191, 332, 357, 442, 521, 538, 911
AjnI CCWGG 3 cut(s) 823, 899, 1045
AloI GAACNNNNNNTCC 2 cut(s) 645, 677
AluBI AGCT 8 cut(s) 148, 282, 291, 526, 673, 695, 775, 880
AluI AGCT 8 cut(s) 148, 282, 291, 526, 673, 695, 775, 880
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 2 cut(s) 861, 926
AlwI GGATC 3 cut(s) 210, 279, 293
Aor13HI TCCGGA 1 cut(s) 530
Aor51HI AGCGCT 1 cut(s) 302
AoxI GGCC 1 cut(s) 913
ApeKI GCWGC 2 cut(s) 211, 402
ApoI RAATTY 2 cut(s) 41, 196
Asp700I GAANNNNTTC 1 cut(s) 508
AspA2I CCTAGG 1 cut(s) 463
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 424
AvaII GGWCC 1 cut(s) 460
AvrII CCTAGG 1 cut(s) 463
AxyI CCTNAGG 1 cut(s) 492
BaeGI GKGCMC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 198, 414
BccI CCATC 1 cut(s) 437
BciT130I CCWGG 3 cut(s) 825, 901, 1047
BclI TGATCA 1 cut(s) 594
BcoDI GTCTC 2 cut(s) 861, 926
BfaI CTAG 8 cut(s) 90, 410, 464, 555, 692, 740, 881, 941
BfoI RGCGCY 1 cut(s) 304
BfrI CTTAAG 2 cut(s) 296, 319
BfuAI ACCTGC 1 cut(s) 459
BisI GCNGC 4 cut(s) 49, 175, 212, 403
BlnI CCTAGG 1 cut(s) 463
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 4 cut(s) 50, 176, 213, 404
BmcAI AGTACT 2 cut(s) 609, 929
Bme1390I CCNGG 3 cut(s) 825, 901, 1047
Bme18I GGWCC 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 1044
BmrFI CCNGG 3 cut(s) 825, 901, 1047
BmrI ACTGGG 1 cut(s) 823
BmsI GCATC 3 cut(s) 317, 691, 864
BmuI ACTGGG 1 cut(s) 823
Bpu10I CCTNAGC 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 304
BpuEI CTTGAG 2 cut(s) 599, 908
BsaI GGTCTC 1 cut(s) 861
BsaJI CCNNGG 3 cut(s) 175, 463, 1046
BsaWI WCCGGW 1 cut(s) 530
BsaXI ACNNNNNCTCC 4 cut(s) 742, 772, 858, 888
Bsc4I CCNNNNNNNGG 1 cut(s) 1033
Bse1I ACTGG 2 cut(s) 818, 956
Bse21I CCTNAGG 1 cut(s) 492
BseAI TCCGGA 1 cut(s) 530
BseBI CCWGG 3 cut(s) 825, 901, 1047
BseDI CCNNGG 3 cut(s) 175, 463, 1046
BseGI GGATG 2 cut(s) 124, 259
BseLI CCNNNNNNNGG 1 cut(s) 1033
BseMII CTCAG 4 cut(s) 235, 506, 593, 683
BseNI ACTGG 2 cut(s) 818, 956
BseRI GAGGAG 3 cut(s) 50, 359, 747
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 2 cut(s) 198, 414
BsgI GTGCAG 1 cut(s) 229
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 915
BsiHKAI GWGCWC 1 cut(s) 528
BsiSI CCGG 2 cut(s) 531, 571
BslI CCNNNNNNNGG 1 cut(s) 1033
BsmAI GTCTC 2 cut(s) 861, 926
BsnI GGCC 1 cut(s) 915
Bso31I GGTCTC 1 cut(s) 861
Bsp1286I GDGCHC 2 cut(s) 351, 528
Bsp13I TCCGGA 1 cut(s) 530
Bsp143I GATC 5 cut(s) 215, 271, 285, 594, 996
Bsp1720I GCTNAGC 1 cut(s) 304
BspACI CCGC 4 cut(s) 7, 48, 175, 177
BspANI GGCC 1 cut(s) 915
BspCNI CTCAG 4 cut(s) 234, 505, 594, 682
BspEI TCCGGA 1 cut(s) 530
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 1044
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 3 cut(s) 210, 279, 293
BspTI CTTAAG 2 cut(s) 296, 319
BspTNI GGTCTC 1 cut(s) 861
BsrI ACTGG 2 cut(s) 818, 956
BssECI CCNNGG 3 cut(s) 175, 463, 1046
BssMI GATC 5 cut(s) 215, 271, 285, 594, 996
BssT1I CCWWGG 1 cut(s) 463
Bst2UI CCWGG 3 cut(s) 825, 901, 1047
Bst4CI ACNGT 2 cut(s) 250, 637
Bst6I CTCTTC 3 cut(s) 27, 281, 358
BstAFI CTTAAG 2 cut(s) 296, 319
BstDEI CTNAG 8 cut(s) 149, 221, 304, 492, 602, 669, 674, 782
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 2 cut(s) 124, 259
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 5 cut(s) 218, 274, 288, 597, 999
BstMAI GTCTC 2 cut(s) 861, 926
BstMBI GATC 5 cut(s) 215, 271, 285, 594, 996
BstMWI GCNNNNNNNGC 5 cut(s) 288, 559, 679, 701, 745
BstNI CCWGG 3 cut(s) 825, 901, 1047
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 3 cut(s) 823, 899, 1045
BstSLI GKGCMC 1 cut(s) 351
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 198, 414
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
Bsu36I CCTNAGG 1 cut(s) 492
BsuRI GGCC 1 cut(s) 915
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 2 cut(s) 124, 259
BtsI GCAGTG 1 cut(s) 892
BtsIMutI CAGTG 2 cut(s) 246, 892
BveI ACCTGC 1 cut(s) 459
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 460
Cfr42I CCGCGG 1 cut(s) 178
Csp6I GTAC 4 cut(s) 608, 630, 928, 980
CviAII CATG 2 cut(s) 620, 991
CviQI GTAC 4 cut(s) 608, 630, 928, 980
DdeI CTNAG 8 cut(s) 149, 221, 304, 492, 602, 669, 674, 782
DpnI GATC 5 cut(s) 217, 273, 287, 596, 998
DpnII GATC 5 cut(s) 215, 271, 285, 594, 996
Eam1104I CTCTTC 3 cut(s) 27, 281, 358
EarI CTCTTC 3 cut(s) 27, 281, 358
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 463
Eco147I AGGCCT 1 cut(s) 915
Eco24I GRGCYC 1 cut(s) 528
Eco31I GGTCTC 1 cut(s) 861
Eco47I GGWCC 1 cut(s) 460
Eco47III AGCGCT 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 262
Eco81I CCTNAGG 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 526
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 3 cut(s) 823, 899, 1045
EcoT14I CCWWGG 1 cut(s) 463
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 2 cut(s) 623, 994
FaiI YATR 8 cut(s) 100, 363, 621, 778, 919, 974, 992, 1040
FalI AAGNNNNNCTT 2 cut(s) 496, 528
FatI CATG 2 cut(s) 619, 990
FbaI TGATCA 1 cut(s) 594
FblI GTMKAC 1 cut(s) 948
Fnu4HI GCNGC 4 cut(s) 49, 175, 212, 403
FokI GGATG 2 cut(s) 131, 266
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 4 cut(s) 49, 175, 212, 403
FspBI CTAG 8 cut(s) 90, 410, 464, 555, 692, 740, 881, 941
GlaI GCGC 1 cut(s) 302
GluI GCNGC 4 cut(s) 49, 175, 212, 403
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 1 cut(s) 915
HapII CCGG 2 cut(s) 531, 571
HhaI GCGC 1 cut(s) 303
Hin1II CATG 2 cut(s) 623, 994
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 3 cut(s) 534, 547, 904
HpaII CCGG 2 cut(s) 531, 571
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 1 cut(s) 949
Hpy188I TCNGA 2 cut(s) 224, 315
Hpy188III TCNNGA 8 cut(s) 521, 531, 544, 578, 837, 859, 908, 1054
Hpy8I GTNNAC 1 cut(s) 949
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 8 cut(s) 435, 498, 672, 737, 790, 905, 949, 961
HpyCH4III ACNGT 2 cut(s) 250, 637
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 6 cut(s) 29, 246, 402, 704, 844, 855
HpyF10VI GCNNNNNNNGC 5 cut(s) 288, 559, 679, 701, 745
HpyF3I CTNAG 8 cut(s) 149, 221, 304, 492, 602, 669, 674, 782
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 2 cut(s) 623, 994
HspAI GCGC 1 cut(s) 301
Kpn2I TCCGGA 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 594
KspI CCGCGG 1 cut(s) 178
Kzo9I GATC 5 cut(s) 215, 271, 285, 594, 996
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 2 cut(s) 198, 414
LweI GCATC 3 cut(s) 317, 691, 864
MaeI CTAG 8 cut(s) 90, 410, 464, 555, 692, 740, 881, 941
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 1007
MalI GATC 5 cut(s) 217, 273, 287, 596, 998
MboI GATC 5 cut(s) 215, 271, 285, 594, 996
MboII GAAGA 6 cut(s) 44, 268, 345, 454, 509, 719
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 2 cut(s) 351, 528
MluCI AATT 7 cut(s) 41, 74, 196, 357, 436, 590, 787
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 2 cut(s) 210, 403
MroI TCCGGA 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 508
MseI TTAA 5 cut(s) 297, 320, 392, 819, 1066
MspA1I CMGCKG 2 cut(s) 177, 282
MspCI CTTAAG 2 cut(s) 296, 319
MspI CCGG 2 cut(s) 531, 571
MspR9I CCNGG 3 cut(s) 825, 901, 1047
MvaI CCWGG 3 cut(s) 825, 901, 1047
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 5 cut(s) 288, 559, 679, 701, 745
NdeII GATC 5 cut(s) 215, 271, 285, 594, 996
NlaIII CATG 2 cut(s) 623, 994
NlaIV GGNNCC 1 cut(s) 1044
NspI RCATGY 1 cut(s) 623
PaqCI CACCTGC 1 cut(s) 459
PceI AGGCCT 1 cut(s) 915
PciI ACATGT 1 cut(s) 619
PdmI GAANNNNTTC 1 cut(s) 508
PfeI GAWTC 2 cut(s) 534, 904
PflFI GACNNNGTC 1 cut(s) 872
PfoI TCCNGGA 1 cut(s) 823
PkrI GCNGC 4 cut(s) 50, 176, 213, 404
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
PscI ACATGT 1 cut(s) 619
Psp124BI GAGCTC 1 cut(s) 528
Psp6I CCWGG 3 cut(s) 823, 899, 1045
PspGI CCWGG 3 cut(s) 823, 899, 1045
PspN4I GGNNCC 1 cut(s) 1044
PspPI GGNCC 1 cut(s) 460
PsuI RGATCY 1 cut(s) 271
PsyI GACNNNGTC 1 cut(s) 872
PvuII CAGCTG 1 cut(s) 282
RsaI GTAC 4 cut(s) 609, 631, 929, 981
RsaNI GTAC 4 cut(s) 608, 630, 928, 980
SacI GAGCTC 1 cut(s) 528
SacII CCGCGG 1 cut(s) 178
SaqAI TTAA 5 cut(s) 297, 320, 392, 819, 1066
SatI GCNGC 4 cut(s) 49, 175, 212, 403
Sau3AI GATC 5 cut(s) 215, 271, 285, 594, 996
Sau96I GGNCC 1 cut(s) 460
ScaI AGTACT 2 cut(s) 609, 929
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 3 cut(s) 825, 901, 1047
SduI GDGCHC 2 cut(s) 351, 528
SfaNI GCATC 3 cut(s) 317, 691, 864
Sfr303I CCGCGG 1 cut(s) 178
SgrBI CCGCGG 1 cut(s) 178
SinI GGWCC 1 cut(s) 460
SmlI CTYRAG 4 cut(s) 296, 319, 578, 923
SmoI CTYRAG 4 cut(s) 296, 319, 578, 923
Sse9I AATT 7 cut(s) 41, 74, 196, 357, 436, 590, 787
SseBI AGGCCT 1 cut(s) 915
SsiI CCGC 4 cut(s) 7, 48, 175, 177
SspI AATATT 1 cut(s) 21
SspMI CTAG 8 cut(s) 90, 410, 464, 555, 692, 740, 881, 941
SstI GAGCTC 1 cut(s) 528
StuI AGGCCT 1 cut(s) 915
StyD4I CCNGG 3 cut(s) 823, 899, 1045
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 2 cut(s) 250, 637
TaiI ACGT 1 cut(s) 139
TaqI TCGA 2 cut(s) 54, 858
TasI AATT 7 cut(s) 41, 74, 196, 357, 436, 590, 787
TatI WGTACW 3 cut(s) 607, 927, 979
TauI GCSGC 2 cut(s) 51, 177
TfiI GAWTC 2 cut(s) 534, 904
Tru1I TTAA 5 cut(s) 297, 320, 392, 819, 1066
Tru9I TTAA 5 cut(s) 297, 320, 392, 819, 1066
TscAI CASTG 2 cut(s) 253, 892
TseI GCWGC 2 cut(s) 211, 402
TspDTI ATGAA 4 cut(s) 126, 135, 350, 666
TspGWI ACGGA 1 cut(s) 1034
TspRI CASTG 2 cut(s) 253, 892
Tth111I GACNNNGTC 1 cut(s) 872
Vha464I CTTAAG 2 cut(s) 296, 319
VpaK11BI GGWCC 1 cut(s) 460
XapI RAATTY 2 cut(s) 41, 196
XceI RCATGY 1 cut(s) 623
XmaJI CCTAGG 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 948
XmnI GAANNNNTTC 1 cut(s) 508
XspI CTAG 8 cut(s) 90, 410, 464, 555, 692, 740, 881, 941
ZrmI AGTACT 2 cut(s) 609, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.