Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

18044973 .. 18046318

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1192500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTCTTTCTGTATGTATTGGGGTTGAACATGCAACTATCACTTTGGTTCTGGACGATTGGTGGCTGTATGCGCCTTGTCCATGTGAAAACGGTTGTCCTTGATAAAACAGGGACTCTGACAGTTGGGAAACCCGTGGTAGTCAATGCAGTAATGCAGTGCTCTTCTCCAATTTCTCATGCGCATAATAATGTCCAGGTTGGTCCTGAGGTTGAGAAATATGTTTCGGAACACGAGAATCTGGCTCGAACATGTGTGTTGGTTGCCATTGATGGAATGATTGCCGGATCTTTTGCTGTAACTGATCCAGTGAAGCAAGAGGCTGCGCGGATGAAAGGAATGGTGGTGGCAATGGTGGGAGATGGAATCAATGACTCTCCAGCTTTGGTTGCAGCAGATGTTGGCATAGCAATTGGTGCTGGCTCTGACGTAGCTATAGAAGCCGCTGATATAGTTCTCATGAAGAGCAACTTGGAAGATGTAGTTACAGCCATAGATCTCTCCAGAAAAACTATGTCACGAATTCGATTGAATTATGTCTGGGCCCTGGGCTACAATATCCTTGGCAAGCCAGTCGCAGCTGGAGTCTTTTCACTGGAATTCGACTACCACCGTGGCTTGCCGGTGCATTCATATAAGAAGCCTTTGCATATTCAGAGCGTCTCCAACAGCAAGTTTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

228

Amino Acids

24.46

Weight (kDa)

7.05

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	183
AccII	CGCG	1 cut(s)	328
AciI	CCGC	2 cut(s)	328, 444
AclWI	GGATC	2 cut(s)	295, 299
AcsI	RAATTY	2 cut(s)	522, 599
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	28, 532
AjnI	CCWGG	2 cut(s)	195, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	3 cut(s)	383, 434, 581
AluI	AGCT	3 cut(s)	383, 434, 581
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	667
AlwI	GGATC	2 cut(s)	295, 299
AoxI	GGCC	1 cut(s)	543
ApaI	GGGCCC	1 cut(s)	547
ApeKI	GCWGC	3 cut(s)	323, 392, 578
ApoI	RAATTY	2 cut(s)	522, 599
AspLEI	GCGC	3 cut(s)	75, 184, 328
AspS9I	GGNCC	3 cut(s)	203, 543, 544
AvaII	GGWCC	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	547
BauI	CACGAG	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	310, 404, 590
BccI	CCATC	2 cut(s)	266, 356
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BciT130I	CCWGG	2 cut(s)	197, 548
BcoDI	GTCTC	1 cut(s)	667
BfmI	CTRYAG	1 cut(s)	435
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	4 cut(s)	324, 393, 444, 579
BlsI	GCNGC	4 cut(s)	325, 394, 445, 580
Bme1390I	CCNGG	2 cut(s)	197, 548
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	203, 543, 544
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	2 cut(s)	197, 548
BpmI	CTGGAG	3 cut(s)	363, 487, 603
BsaJI	CCNNGG	5 cut(s)	135, 546, 547, 562, 613
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	3 cut(s)	308, 572, 600
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	197, 548
BseDI	CCNNGG	5 cut(s)	135, 546, 547, 562, 613
BseGI	GGATG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	308, 572, 600
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	3 cut(s)	310, 404, 590
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	1 cut(s)	545
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	285, 623
BslFI	GGGAC	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	667
BsmBI	CGTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	1 cut(s)	545
Bsp120I	GGGCCC	1 cut(s)	543
Bsp1286I	GDGCHC	2 cut(s)	164, 547
Bsp143I	GATC	3 cut(s)	287, 304, 496
BspACI	CCGC	2 cut(s)	328, 444
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	328
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	545
BspPI	GGATC	2 cut(s)	295, 299
BspQI	GCTCTTC	2 cut(s)	169, 458
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	622
BsrI	ACTGG	3 cut(s)	308, 572, 600
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	5 cut(s)	135, 546, 547, 562, 613
BssMI	GATC	3 cut(s)	287, 304, 496
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	197, 548
Bst4CI	ACNGT	3 cut(s)	94, 124, 614
Bst6I	CTCTTC	2 cut(s)	169, 458
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	421, 569, 620
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	2 cut(s)	135, 613
BstF5I	GGATG	1 cut(s)	336
BstFNI	CGCG	1 cut(s)	328
BstHHI	GCGC	3 cut(s)	75, 184, 328
BstKTI	GATC	3 cut(s)	290, 307, 499
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	3 cut(s)	287, 304, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 389, 416, 440
BstNI	CCWGG	2 cut(s)	197, 548
BstNSI	RCATGY	2 cut(s)	34, 255
BstSCI	CCNGG	2 cut(s)	195, 546
BstSFI	CTRYAG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	547
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	3 cut(s)	310, 404, 590
BstX2I	RGATCY	2 cut(s)	287, 496
BstYI	RGATCY	2 cut(s)	287, 496
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	545
BtgI	CCRYGG	2 cut(s)	135, 613
BtsCI	GGATG	1 cut(s)	336
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	3 cut(s)	164, 315, 593
Cac8I	GCNNGC	3 cut(s)	421, 569, 620
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	3 cut(s)	75, 184, 328
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	3 cut(s)	203, 543, 544
CseI	GACGC	1 cut(s)	649
CviAII	CATG	5 cut(s)	31, 83, 179, 252, 460
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	3 cut(s)	289, 306, 498
DpnII	GATC	3 cut(s)	287, 304, 496
Eam1104I	CTCTTC	2 cut(s)	169, 458
EarI	CTCTTC	2 cut(s)	169, 458
Eco130I	CCWWGG	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	203
Eco81I	CCTNAGG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRI	GAATTC	2 cut(s)	522, 599
EcoRII	CCWGG	2 cut(s)	195, 546
EcoT14I	CCWWGG	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	562
Esp3I	CGTCTC	1 cut(s)	667
FaeI	CATG	5 cut(s)	34, 86, 182, 255, 463
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	5 cut(s)	30, 82, 178, 251, 459
Fnu4HI	GCNGC	4 cut(s)	324, 393, 444, 579
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	4 cut(s)	324, 393, 444, 579
FspAI	RTGCGCAY	1 cut(s)	183
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	3 cut(s)	74, 183, 327
GluI	GCNGC	4 cut(s)	324, 393, 444, 579
GsuI	CTGGAG	3 cut(s)	363, 487, 603
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	2 cut(s)	285, 623
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	3 cut(s)	75, 184, 328
Hin1II	CATG	5 cut(s)	34, 86, 182, 255, 463
Hin6I	GCGC	3 cut(s)	73, 182, 326
HinP1I	GCGC	3 cut(s)	73, 182, 326
HinfI	GANTC	5 cut(s)	115, 238, 366, 374, 585
HpaII	CCGG	2 cut(s)	285, 623
Hpy188I	TCNGA	4 cut(s)	120, 229, 427, 657
Hpy188III	TCNNGA	5 cut(s)	52, 206, 460, 504, 519
HpyCH4III	ACNGT	3 cut(s)	94, 124, 614
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	6 cut(s)	34, 149, 157, 392, 628, 649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 389, 416, 440
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	5 cut(s)	34, 86, 182, 255, 463
HspAI	GCGC	3 cut(s)	73, 182, 326
Kzo9I	GATC	3 cut(s)	287, 304, 496
LguI	GCTCTTC	2 cut(s)	169, 458
Lsp1109I	GCAGC	3 cut(s)	310, 404, 590
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	3 cut(s)	298, 484, 516
MalI	GATC	3 cut(s)	289, 306, 498
MboI	GATC	3 cut(s)	287, 304, 496
MboII	GAAGA	3 cut(s)	156, 475, 488
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	2 cut(s)	287, 496
MhlI	GDGCHC	2 cut(s)	164, 547
MluCI	AATT	5 cut(s)	171, 411, 522, 532, 599
MlyI	GAGTC	3 cut(s)	109, 368, 594
MnlI	CCTC	2 cut(s)	202, 313
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	2 cut(s)	446, 581
MspI	CCGG	2 cut(s)	285, 623
MspR9I	CCNGG	2 cut(s)	197, 548
MunI	CAATTG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	2 cut(s)	197, 548
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	4 cut(s)	72, 389, 416, 440
NdeII	GATC	3 cut(s)	287, 304, 496
NlaIII	CATG	5 cut(s)	34, 86, 182, 255, 463
NlaIV	GGNNCC	1 cut(s)	545
NmuCI	GTSAC	1 cut(s)	516
NsbI	TGCGCA	1 cut(s)	183
NspI	RCATGY	2 cut(s)	34, 255
PagI	TCATGA	1 cut(s)	459
PasI	CCCWGGG	1 cut(s)	547
PciI	ACATGT	1 cut(s)	251
PciSI	GCTCTTC	2 cut(s)	169, 458
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	238, 366
PkrI	GCNGC	4 cut(s)	325, 394, 445, 580
PleI	GAGTC	3 cut(s)	109, 368, 593
PpsI	GAGTC	3 cut(s)	109, 368, 593
PscI	ACATGT	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	195, 546
PspGI	CCWGG	2 cut(s)	195, 546
PspN4I	GGNNCC	1 cut(s)	545
PspOMI	GGGCCC	1 cut(s)	543
PspPI	GGNCC	3 cut(s)	203, 543, 544
PsuI	RGATCY	2 cut(s)	287, 496
PvuII	CAGCTG	1 cut(s)	581
RseI	CAYNNNNRTG	1 cut(s)	189
SapI	GCTCTTC	2 cut(s)	169, 458
SatI	GCNGC	4 cut(s)	324, 393, 444, 579
Sau3AI	GATC	3 cut(s)	287, 304, 496
Sau96I	GGNCC	3 cut(s)	203, 543, 544
SchI	GAGTC	3 cut(s)	109, 368, 594
ScrFI	CCNGG	2 cut(s)	197, 548
SduI	GDGCHC	2 cut(s)	164, 547
SetI	ASST	6 cut(s)	201, 213, 385, 432, 436, 583
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	5 cut(s)	171, 411, 522, 532, 599
SsiI	CCGC	2 cut(s)	328, 444
StyD4I	CCNGG	2 cut(s)	195, 546
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	3 cut(s)	94, 124, 614
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	3 cut(s)	247, 526, 603
TasI	AATT	5 cut(s)	171, 411, 522, 532, 599
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	2 cut(s)	238, 366
TscAI	CASTG	3 cut(s)	164, 315, 600
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	3 cut(s)	323, 392, 578
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	3 cut(s)	347, 476, 621
TspRI	CASTG	3 cut(s)	164, 315, 600
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	2 cut(s)	522, 599
XceI	RCATGY	2 cut(s)	34, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.