Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

14454606 .. 14455001

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG169000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTGGGAGACGGGATCAATGACTCACCGGCACTTGTGGCAGCAGATGTTGGAATGGCAATTGGTGCTGGCACAGACATTGCGATCGAGGCAGCTGACATTGTTCTTATGAAGAGCAACTTGGAAGATGTTATAACAGCCATTGACCTTTCCCGGAAAACCTTTTCCCGTATTCGTCTGAACTACATTTGGGCCTTGGGTTACAATGTGCTTGGAATCCCGATAGCTGCAGGGGTCCTTTTTCCTTCCACTAGGTTCAGATTACCACCATGGATTGCAGGAGCTGCAATGGCAGCATCCTCCGTTAGTGTTGTATGCTGTTCTCTGTTGTTGAAGAACTACAAGAGACCCAAGAAGTTGGATATCCTTGAGATACATGAAGTAAGGGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

131

Amino Acids

14.04

Weight (kDa)

6.57

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	134
AclWI	GGATC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	95, 227, 284
AluI	AGCT	3 cut(s)	95, 227, 284
Alw26I	GTCTC	2 cut(s)	3, 340
AlwI	GGATC	1 cut(s)	23
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	5 cut(s)	41, 92, 227, 284, 293
AspS9I	GGNCC	2 cut(s)	192, 235
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	235
BbvI	GCAGC	5 cut(s)	53, 104, 214, 271, 305
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	3, 340
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	5 cut(s)	42, 93, 228, 285, 294
BlsI	GCNGC	5 cut(s)	43, 94, 229, 286, 295
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	192, 235
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	195, 269
Bse118I	RCCGGY	1 cut(s)	28
Bse3DI	GCAATG	2 cut(s)	78, 294
BseDI	CCNNGG	2 cut(s)	195, 269
BseGI	GGATG	1 cut(s)	296
BseMI	GCAATG	2 cut(s)	78, 294
BseXI	GCAGC	5 cut(s)	53, 104, 214, 271, 305
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	29, 154
BsmAI	GTCTC	2 cut(s)	3, 340
BsmBI	CGTCTC	1 cut(s)	3
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	15, 84
Bsp19I	CCATGG	1 cut(s)	269
BspANI	GGCC	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	236
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	1 cut(s)	23
BspQI	GCTCTTC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	340
BsrDI	GCAATG	2 cut(s)	78, 294
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	195, 269
BssMI	GATC	2 cut(s)	15, 84
BssT1I	CCWWGG	2 cut(s)	195, 269
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	2 cut(s)	65, 284
BstC8I	GCNNGC	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	2 cut(s)	18, 87
BstMAI	GTCTC	2 cut(s)	3, 340
BstMBI	GATC	2 cut(s)	15, 84
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 65, 89, 284, 290, 293
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	5 cut(s)	53, 104, 214, 271, 305
BstXI	CCANNNNNNTGG	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	70
CaiI	CAGNNNCTG	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	192, 235
CviAII	CATG	2 cut(s)	270, 377
CviJI	RGCY	5 cut(s)	95, 140, 194, 227, 284
CviKI_1	RGCY	5 cut(s)	95, 140, 194, 227, 284
DpnI	GATC	2 cut(s)	17, 86
DpnII	GATC	2 cut(s)	15, 84
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	195, 269
Eco31I	GGTCTC	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	195, 269
ErhI	CCWWGG	2 cut(s)	195, 269
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	2 cut(s)	273, 380
FaiI	YATR	5 cut(s)	110, 134, 271, 316, 378
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	2 cut(s)	269, 376
Fnu4HI	GCNGC	5 cut(s)	42, 93, 228, 285, 294
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	5 cut(s)	42, 93, 228, 285, 294
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	5 cut(s)	42, 93, 228, 285, 294
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	29, 154
Hin1II	CATG	2 cut(s)	273, 380
HinfI	GANTC	2 cut(s)	23, 216
HpaII	CCGG	2 cut(s)	29, 154
HphI	GGTGA	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	180, 260
Hpy188III	TCNNGA	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	230, 278, 287
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 65, 89, 284, 290, 293
Hsp92II	CATG	2 cut(s)	273, 380
Kzo9I	GATC	2 cut(s)	15, 84
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	5 cut(s)	42, 54, 167, 216, 264
Lsp1109I	GCAGC	5 cut(s)	53, 104, 214, 271, 305
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	17, 86
MboI	GATC	2 cut(s)	15, 84
MboII	GAAGA	3 cut(s)	124, 137, 346
MfeI	CAATTG	1 cut(s)	60
MluCI	AATT	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	31, 339
MnlI	CCTC	2 cut(s)	82, 310
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	2 cut(s)	29, 154
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	60
MwoI	GCNNNNNNNGC	6 cut(s)	38, 65, 89, 284, 290, 293
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	15, 84
NlaIII	CATG	2 cut(s)	273, 380
NlaIV	GGNNCC	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	216
PfoI	TCCNGGA	1 cut(s)	152
PkrI	GCNGC	5 cut(s)	43, 94, 229, 286, 295
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PpuMI	RGGWCCY	1 cut(s)	235
PsiI	TTATAA	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	2 cut(s)	192, 235
PspPPI	RGGWCCY	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	284
PvuI	CGATCG	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	107
SatI	GCNGC	5 cut(s)	42, 93, 228, 285, 294
Sau3AI	GATC	2 cut(s)	15, 84
Sau96I	GGNCC	2 cut(s)	192, 235
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	6 cut(s)	97, 150, 164, 229, 257, 286
SfaNI	GCATC	1 cut(s)	305
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	2 cut(s)	195, 269
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	216
TseI	GCWGC	5 cut(s)	41, 92, 227, 284, 293
TspDTI	ATGAA	2 cut(s)	125, 393
TspGWI	ACGGA	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	235
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.