Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

55976385 .. 55976684

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAATTCATGGCAGGGAATGGATGAGCTTGTTGGTATGAATTTCCTACCGCCGCGACTTGGAGTCTGGAGACTTGGACTCTTGGAGCACAGAGGCGCAGAGCAGTCCGACTCAGCGACCCGGCGATCTGCAAAAGTGCAAGGCTGGAAGCCTGGAACCAGCAACCCATCTCCGGTAGTCCGGTCTCCGAGCTCCCCACCGCCACCAGCAACCCGTCTGGGCCGTCTGGCTGTCTCCGTGGTATCTCACCATCTCTCTCTCTCCCTAGTTCTGATTTCTGAAGTTCTGAGTTTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.74

Weight (kDa)

11.21

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	55
AciI	CCGC	3 cut(s)	50, 53, 200
AcsI	RAATTY	2 cut(s)	4, 40
AcuI	CTGAAG	1 cut(s)	300
AfiI	CCNNNNNNNGG	2 cut(s)	59, 172
AhdI	GACNNNNNGTC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	2 cut(s)	28, 192
AluI	AGCT	2 cut(s)	28, 192
Alw21I	GWGCWC	2 cut(s)	90, 194
Alw26I	GTCTC	3 cut(s)	64, 189, 238
AoxI	GGCC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	4, 40
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	194
Bbv12I	GWGCWC	2 cut(s)	90, 194
BccI	CCATC	2 cut(s)	175, 258
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	64, 189, 238
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	121, 153
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	121, 153
BpmI	CTGGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	2 cut(s)	172, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 172
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	59, 172
BseMII	CTCAG	2 cut(s)	126, 278
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	90, 194
BsiSI	CCGG	3 cut(s)	121, 173, 181
BslI	CCNNNNNNNGG	2 cut(s)	59, 172
BsmAI	GTCTC	3 cut(s)	64, 189, 238
BsnI	GGCC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	90, 194
Bsp143I	GATC	1 cut(s)	125
BspACI	CCGC	3 cut(s)	50, 53, 200
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	125, 279
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	112, 287
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	28
BstFNI	CGCG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	1 cut(s)	128
BstMAI	GTCTC	3 cut(s)	64, 189, 238
BstMBI	GATC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	119, 151
BstUI	CGCG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	28
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	220
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	6 cut(s)	28, 144, 151, 192, 222, 230
CviKI_1	RGCY	6 cut(s)	28, 144, 151, 192, 222, 230
DdeI	CTNAG	2 cut(s)	112, 287
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
DriI	GACNNNNNGTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	1 cut(s)	12
FaiI	YATR	2 cut(s)	10, 38
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	3 cut(s)	121, 173, 181
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	3 cut(s)	63, 78, 110
HpaII	CCGG	3 cut(s)	121, 173, 181
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	5 cut(s)	109, 189, 273, 280, 288
Hpy188III	TCNNGA	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	131, 139
HpyF3I	CTNAG	2 cut(s)	112, 287
Hsp92II	CATG	1 cut(s)	12
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	125
LmnI	GCTCC	2 cut(s)	85, 197
MaeI	CTAG	1 cut(s)	266
MalI	GATC	1 cut(s)	127
MboI	GATC	1 cut(s)	125
MhlI	GDGCHC	2 cut(s)	90, 194
MluCI	AATT	3 cut(s)	4, 40, 295
MlyI	GAGTC	3 cut(s)	72, 72, 104
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	294
MspI	CCGG	3 cut(s)	121, 173, 181
MspR9I	CCNGG	2 cut(s)	121, 153
MvaI	CCWGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	55
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	1 cut(s)	125
NlaIII	CATG	1 cut(s)	12
NlaIV	GGNNCC	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	3 cut(s)	71, 72, 104
PpsI	GAGTC	3 cut(s)	71, 72, 104
Psp124BI	GAGCTC	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	125
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	3 cut(s)	72, 72, 104
ScrFI	CCNGG	2 cut(s)	121, 153
SduI	GDGCHC	2 cut(s)	90, 194
SetI	ASST	2 cut(s)	30, 194
Sse9I	AATT	3 cut(s)	4, 40, 295
SsiI	CCGC	3 cut(s)	50, 53, 200
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	2 cut(s)	119, 151
TasI	AATT	3 cut(s)	4, 40, 295
TauI	GCSGC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TspDTI	ATGAA	2 cut(s)	17, 53
TspGWI	ACGGA	1 cut(s)	226
XapI	RAATTY	2 cut(s)	4, 40
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.