Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

51570778 .. 51572282

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG291600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGATGAGCTTGTTGGTATGAATTTCCTACCGCCACGACTTGGAGTCTGGAGACTTGGACTCTTGGAGCACAGAGGCTCAGAGCAGTCCGACTCAGCGACCCGGCGATCTGCAAAAGTGCAAGGCTGGAAGCCTGGAACCAGCAACCCATCTCCGGTCTCCGAGCTCCCCACCGCCACCAGCAACCCGTCTGGGCCGTCTGGCTGTCTCCATGGTTCTTGCATTGCTGAAAGTCAAGACACTGGGTCTTCGGCAACCTCATCAAGATTTGCAGTTGGCCAGTTGTCTACTTCTCTGGCCTCAGGCCTGCAATTTCAATATCATCAACAGGCACATAAGGTTAGAGAGCTTCAGGCTACAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

171

Amino Acids

17.92

Weight (kDa)

6.04

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	287
AciI	CCGC	3 cut(s)	32, 174, 416
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	41, 154
AgsI	TTSAA	1 cut(s)	317
AhdI	GACNNNNNGTC	2 cut(s)	44, 244
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	3 cut(s)	10, 166, 349
AluI	AGCT	3 cut(s)	10, 166, 349
Alw21I	GWGCWC	2 cut(s)	72, 168
Alw26I	GTCTC	3 cut(s)	46, 163, 212
AoxI	GGCC	4 cut(s)	194, 277, 297, 304
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	393
AxyI	CCTNAGG	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	72, 168
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	3 cut(s)	157, 370, 380
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	46, 163, 212
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	2 cut(s)	417, 468
BlsI	GCNGC	2 cut(s)	418, 469
Bme1390I	CCNGG	2 cut(s)	103, 135
BmeRI	GACNNNNNGTC	2 cut(s)	44, 244
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	103, 135
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 154
Bse1I	ACTGG	2 cut(s)	247, 280
Bse21I	CCTNAGG	1 cut(s)	301
Bse3DI	GCAATG	2 cut(s)	222, 453
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	41, 154
BseMI	GCAATG	2 cut(s)	222, 453
BseMII	CTCAG	3 cut(s)	93, 108, 315
BseNI	ACTGG	2 cut(s)	247, 280
BseXI	GCAGC	1 cut(s)	479
BshFI	GGCC	4 cut(s)	196, 279, 299, 306
BsiHKAI	GWGCWC	2 cut(s)	72, 168
BsiSI	CCGG	2 cut(s)	103, 155
BslI	CCNNNNNNNGG	2 cut(s)	41, 154
BsmAI	GTCTC	3 cut(s)	46, 163, 212
BsnI	GGCC	4 cut(s)	196, 279, 299, 306
Bso31I	GGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	72, 168
Bsp143I	GATC	1 cut(s)	107
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	3 cut(s)	32, 174, 416
BspANI	GGCC	4 cut(s)	196, 279, 299, 306
BspCNI	CTCAG	3 cut(s)	92, 107, 314
BspLI	GGNNCC	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	222, 453
BsrI	ACTGG	2 cut(s)	247, 280
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	482
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	308, 445
BstDEI	CTNAG	3 cut(s)	79, 94, 301
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	110
BstMAI	GTCTC	3 cut(s)	46, 163, 212
BstMBI	GATC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 440, 464
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	2 cut(s)	101, 133
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	479
BstV2I	GAAGAC	1 cut(s)	240
Bsu36I	CCTNAGG	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	196, 279, 299, 306
BtgI	CCRYGG	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	240, 366
Cac8I	GCNNGC	2 cut(s)	308, 445
Cfr13I	GGNCC	1 cut(s)	194
CviAII	CATG	1 cut(s)	212
DdeI	CTNAG	3 cut(s)	79, 94, 301
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
DriI	GACNNNNNGTC	2 cut(s)	44, 244
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	482
Eam1105I	GACNNNNNGTC	2 cut(s)	44, 244
EarI	CTCTTC	1 cut(s)	482
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	335
Eco81I	CCTNAGG	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	215
FaiI	YATR	3 cut(s)	20, 213, 336
FatI	CATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	417, 468
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	417, 468
GluI	GCNGC	2 cut(s)	417, 468
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	4 cut(s)	196, 279, 299, 306
HapII	CCGG	2 cut(s)	103, 155
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	4 cut(s)	45, 60, 92, 398
HpaII	CCGG	2 cut(s)	103, 155
HphI	GGTGA	1 cut(s)	393
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	3 cut(s)	82, 91, 163
Hpy188III	TCNNGA	3 cut(s)	49, 236, 264
Hpy8I	GTNNAC	1 cut(s)	288
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	6 cut(s)	113, 121, 222, 272, 310, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 440, 464
HpyF3I	CTNAG	3 cut(s)	79, 94, 301
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	67, 171
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	1 cut(s)	399
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	2 cut(s)	240, 499
MfeI	CAATTG	2 cut(s)	435, 459
MhlI	GDGCHC	2 cut(s)	72, 168
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	4 cut(s)	22, 311, 435, 459
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	4 cut(s)	54, 54, 86, 392
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	5 cut(s)	68, 268, 310, 457, 510
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	279
MspI	CCGG	2 cut(s)	103, 155
MspR9I	CCNGG	2 cut(s)	103, 135
MunI	CAATTG	2 cut(s)	435, 459
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	413, 440, 464
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	306
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	418, 469
PleI	GAGTC	4 cut(s)	53, 54, 86, 392
PpsI	GAGTC	4 cut(s)	53, 54, 86, 392
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	168
SatI	GCNGC	2 cut(s)	417, 468
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	4 cut(s)	54, 54, 86, 392
ScrFI	CCNGG	2 cut(s)	103, 135
SduI	GDGCHC	2 cut(s)	72, 168
SetI	ASST	6 cut(s)	12, 168, 260, 342, 351, 497
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	357
Sse9I	AATT	4 cut(s)	22, 311, 435, 459
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	3 cut(s)	32, 174, 416
SstI	GAGCTC	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	101, 133
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	370
TasI	AATT	4 cut(s)	22, 311, 435, 459
TauI	GCSGC	1 cut(s)	419
TscAI	CASTG	2 cut(s)	247, 373
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	35, 500
TspRI	CASTG	2 cut(s)	247, 373
Van91I	CCANNNNNTGG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.