Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

12488836 .. 12489593

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15570.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAATCTTTGGTTCTGGATGATTGGTGGCTGTATGCACCTTGTCCATGTCAGCAAGCCATACTCGCCAAGTTTTAGATCCCTGTTTCTTGTAGATAACAGCTCTCACGGAGGCAGAACAAAAGGAATGGCGGTGGCAATGGTGGGAGATGGAATCAATGACTCTCCAGCTTTGGTTGCAGCAGATGTTGGCATGGCAATTGGTGCTGACACCGACGTAGCTATAGAAGCCACTGATATAGTTCTGATGAATAGCAACTTGGAAGATGTAGTTACAGCCATAGATCTCTCCAGAAAAACTATCCTCAACATGCCAGTCGCAGCTGGAGTCTTATTCCCTTTCACTGGAATTGGACTACCACCGTGGCTTGCCGGTTCATGTATGGCTGCTTCATCTCTCAACGTGGTATGTTATTCTCTCTTGTTGCAGTCATATAAGAAGCCTTTTCATATTCAGAGCGTCTCGAACTGCAAGTTTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

161

Amino Acids

17.01

Weight (kDa)

6.01

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	4 cut(s)	102, 170, 221, 323
AluI	AGCT	4 cut(s)	102, 170, 221, 323
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	72
ApeKI	GCWGC	3 cut(s)	179, 320, 386
BarI	GAAGNNNNNNTAC	2 cut(s)	373, 405
BbvI	GCAGC	3 cut(s)	191, 332, 373
BccI	CCATC	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	466
BfmI	CTRYAG	1 cut(s)	222
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	3 cut(s)	180, 321, 387
BlsI	GCNGC	3 cut(s)	181, 322, 388
BpmI	CTGGAG	3 cut(s)	150, 274, 345
BsaJI	CCNNGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	314, 349
Bse3DI	GCAATG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	314, 349
BseXI	GCAGC	3 cut(s)	191, 332, 373
BsiSI	CCGG	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	466
BsmBI	CGTCTC	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	77, 283
BspACI	CCGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	314, 349
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	2 cut(s)	77, 283
Bst4CI	ACNGT	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	56, 369
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	2 cut(s)	80, 286
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	2 cut(s)	77, 283
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 176, 203, 227
BstNSI	RCATGY	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	191, 332, 373
BstX2I	RGATCY	2 cut(s)	77, 283
BstYI	RGATCY	2 cut(s)	77, 283
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	231, 342
Cac8I	GCNNGC	2 cut(s)	56, 369
Cfr10I	RCCGGY	1 cut(s)	371
CseI	GACGC	1 cut(s)	448
CviAII	CATG	4 cut(s)	47, 193, 310, 378
DpnI	GATC	2 cut(s)	79, 285
DpnII	GATC	2 cut(s)	77, 283
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	4 cut(s)	50, 196, 313, 381
FatI	CATG	4 cut(s)	46, 192, 309, 377
Fnu4HI	GCNGC	3 cut(s)	180, 321, 387
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	180, 321, 387
GluI	GCNGC	3 cut(s)	180, 321, 387
GsuI	CTGGAG	3 cut(s)	150, 274, 345
HapII	CCGG	1 cut(s)	372
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	4 cut(s)	50, 196, 313, 381
HinfI	GANTC	4 cut(s)	4, 153, 161, 327
HpaII	CCGG	1 cut(s)	372
Hpy188I	TCNGA	2 cut(s)	246, 456
Hpy188III	TCNNGA	3 cut(s)	16, 291, 463
Hpy99I	CGWCG	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4IV	ACGT	2 cut(s)	216, 402
HpyCH4V	TGCA	4 cut(s)	37, 179, 427, 471
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 176, 203, 227
HpySE526I	ACGT	2 cut(s)	216, 402
Hsp92II	CATG	4 cut(s)	50, 196, 313, 381
Kzo9I	GATC	2 cut(s)	77, 283
LpnPI	CCDG	7 cut(s)	95, 180, 304, 309, 327, 330, 385
Lsp1109I	GCAGC	3 cut(s)	191, 332, 373
MaeII	ACGT	2 cut(s)	216, 402
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	79, 285
MboI	GATC	2 cut(s)	77, 283
MboII	GAAGA	1 cut(s)	275
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	2 cut(s)	77, 283
MluCI	AATT	2 cut(s)	198, 348
MlyI	GAGTC	2 cut(s)	155, 336
MnlI	CCTC	2 cut(s)	104, 314
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	1 cut(s)	372
MunI	CAATTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	4 cut(s)	64, 176, 203, 227
NdeII	GATC	2 cut(s)	77, 283
NlaIII	CATG	4 cut(s)	50, 196, 313, 381
NspI	RCATGY	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	4, 153
PkrI	GCNGC	3 cut(s)	181, 322, 388
PleI	GAGTC	2 cut(s)	155, 335
PpsI	GAGTC	2 cut(s)	155, 335
PsuI	RGATCY	2 cut(s)	77, 283
PvuII	CAGCTG	1 cut(s)	323
SatI	GCNGC	3 cut(s)	180, 321, 387
Sau3AI	GATC	2 cut(s)	77, 283
SchI	GAGTC	2 cut(s)	155, 336
SetI	ASST	7 cut(s)	42, 104, 172, 219, 223, 325, 405
SfcI	CTRYAG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	198, 348
SsiI	CCGC	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	363
TaiI	ACGT	2 cut(s)	219, 405
TaqI	TCGA	1 cut(s)	464
TasI	AATT	2 cut(s)	198, 348
TfiI	GAWTC	2 cut(s)	4, 153
TscAI	CASTG	2 cut(s)	238, 349
TseI	GCWGC	3 cut(s)	179, 320, 386
TspDTI	ATGAA	5 cut(s)	17, 263, 366, 381, 437
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	238, 349
XceI	RCATGY	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.