Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

4031055 .. 4032599

Gene Structure 1545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAATTGCAAATTCTATTGCCAATGAAGTTGGTATTGATACTGTTATAGCCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTACCATTGCAATTGAGGCAGCAGACATTGTTATAATGAAGAGTAGGTTTCCTCTTTATTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

99

Amino Acids

10.35

Weight (kDa)

4.54

Isoelectric Point (pI)

16.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	3 - 69	8.3e-11	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	266
AciI	CCGC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	49
AsuHPI	GGTGA	4 cut(s)	34, 41, 98, 177
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	154, 164
BclI	TGATCA	1 cut(s)	103
BisI	GCNGC	2 cut(s)	201, 252
BlsI	GCNGC	2 cut(s)	202, 253
BmsI	GCATC	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	237
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	82, 154
Bst6I	CTCTTC	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	138, 229
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 224, 248
BstV1I	GCAGC	1 cut(s)	263
BtgZI	GCGATG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	138, 229
CviJI	RGCY	3 cut(s)	89, 140, 147
CviKI_1	RGCY	3 cut(s)	89, 140, 147
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	126
FaiI	YATR	3 cut(s)	17, 86, 266
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	201, 252
Fsp4HI	GCNGC	2 cut(s)	201, 252
GluI	GCNGC	2 cut(s)	201, 252
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	4 cut(s)	34, 41, 98, 177
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	82, 154
HpyCH4V	TGCA	3 cut(s)	47, 136, 242
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 224, 248
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	7 cut(s)	12, 114, 122, 122, 129, 201, 213
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	22, 29
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	1 cut(s)	283
MfeI	CAATTG	3 cut(s)	34, 219, 243
MluCI	AATT	6 cut(s)	34, 42, 49, 131, 219, 243
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	241, 294
MslI	CAYNNNNRTG	1 cut(s)	20
MunI	CAATTG	3 cut(s)	34, 219, 243
MwoI	GCNNNNNNNGC	3 cut(s)	197, 224, 248
NdeII	GATC	1 cut(s)	103
NmuCI	GTSAC	2 cut(s)	22, 29
PkrI	GCNGC	2 cut(s)	202, 253
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	2 cut(s)	201, 252
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	176
SetI	ASST	3 cut(s)	31, 103, 281
SfaNI	GCATC	1 cut(s)	183
SgeI	CNNG	8 cut(s)	39, 113, 121, 149, 156, 200, 206, 240
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	6 cut(s)	34, 42, 49, 131, 219, 243
SsiI	CCGC	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	82, 154
TasI	AATT	6 cut(s)	34, 42, 49, 131, 219, 243
TauI	GCSGC	1 cut(s)	203
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	22, 29
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	2 cut(s)	22, 29
TspDTI	ATGAA	3 cut(s)	17, 78, 284
TspRI	CASTG	1 cut(s)	157
XapI	RAATTY	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.