Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

31032806 .. 31033682

Gene Structure 877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0193000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCATCGACGATCGATTTGCAAATTGCTTCTGAGACACCACCGCTTCTCCAAGCTCTCTTCCCTCAACTTCTCAACTCAGCGCGTTTTGCACTCCACTCCATTTCCAAAACCCACCACAAATTTCCACCCTACTCCCTCAAACTCACCGACCCAGTTCATAACTCGCCGCCAATTCAGCGGTTCAGGTGATTTCGATCAGAATAAAGAGGTGGACATGATCAATCTCAAGTTTGCAGAGGCAAGGGAGGAGATAGAGATGGCCATGGAGTCCAAAGAGACCGTCTATTTTGATGAAGAGGCTGCTTGTGCTCGCACTGCTGTCAATGAAGTTCTCGACAGGTATGAAGCTTTGTTGGCCAAGTTGACGGAAGACAAAAGGGCTGCACTGCAGAGGTCGATGGGCCTCAAGATTGAGCAGTTGAAGGCTGAAATCGAACAGCTCAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

150

Amino Acids

17.36

Weight (kDa)

6.98

Isoelectric Point (pI)

58.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	3 cut(s)	43, 169, 180
AcoI	YGGCCR	2 cut(s)	261, 357
AcsI	RAATTY	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	424
AluBI	AGCT	3 cut(s)	55, 350, 442
AluI	AGCT	3 cut(s)	55, 350, 442
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	28, 272
AoxI	GGCC	3 cut(s)	261, 357, 403
ApeKI	GCWGC	2 cut(s)	302, 383
ApoI	RAATTY	1 cut(s)	121
ArsI	GACNNNNNNTTYG	3 cut(s)	32, 267, 299
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	138, 200
BalI	TGGCCA	2 cut(s)	263, 359
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	289, 370
BccI	CCATC	2 cut(s)	253, 394
BcgI	CGANNNNNNTGC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	28, 272
BfmI	CTRYAG	1 cut(s)	389
BisI	GCNGC	3 cut(s)	169, 303, 384
BlsI	GCNGC	3 cut(s)	170, 304, 385
BmgT120I	GGNCC	1 cut(s)	403
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	212, 392
Bsa29I	ATCGAT	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	264
BseJI	GATNNNNATC	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	23, 92
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	289, 370
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	3 cut(s)	263, 359, 405
BshVI	ATCGAT	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	28, 272
BsnI	GGCC	3 cut(s)	263, 359, 405
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	11, 196, 219
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	43, 169, 180
BspANI	GGCC	3 cut(s)	263, 359, 405
BspCNI	CTCAG	2 cut(s)	24, 91
BspDI	ATCGAT	1 cut(s)	14
BspFNI	CGCG	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	393
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	11, 196, 219
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	2 cut(s)	64, 291
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	32, 78
BstDSI	CCRYGG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	3 cut(s)	14, 199, 222
BstMAI	GTCTC	2 cut(s)	28, 272
BstMBI	GATC	3 cut(s)	11, 196, 219
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 177, 308, 317, 356
BstSFI	CTRYAG	1 cut(s)	389
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	289, 370
BstV2I	GAAGAC	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	14
BsuRI	GGCC	3 cut(s)	263, 359, 405
BsuTUI	ATCGAT	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	264
BtsI	GCAGTG	2 cut(s)	315, 386
BtsIMutI	CAGTG	2 cut(s)	315, 386
Cac8I	GCNNGC	1 cut(s)	313
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	403
ClaI	ATCGAT	1 cut(s)	14
CviAII	CATG	2 cut(s)	217, 265
CviJI	RGCY	9 cut(s)	55, 263, 302, 350, 359, 383, 405, 428, 442
CviKI_1	RGCY	9 cut(s)	55, 263, 302, 350, 359, 383, 405, 428, 442
DdeI	CTNAG	2 cut(s)	32, 78
DpnI	GATC	3 cut(s)	13, 198, 221
DpnII	GATC	3 cut(s)	11, 196, 219
EaeI	YGGCCR	2 cut(s)	261, 357
Eam1104I	CTCTTC	2 cut(s)	64, 291
EarI	CTCTTC	2 cut(s)	64, 291
Eco130I	CCWWGG	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	220, 268
FaiI	YATR	4 cut(s)	161, 218, 266, 345
FatI	CATG	2 cut(s)	216, 264
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	169, 303, 384
Fsp4HI	GCNGC	3 cut(s)	169, 303, 384
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	3 cut(s)	169, 303, 384
HaeIII	GGCC	3 cut(s)	263, 359, 405
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	220, 268
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	2 cut(s)	138, 200
Hpy166II	GTNNAC	2 cut(s)	214, 366
Hpy188I	TCNGA	2 cut(s)	33, 201
Hpy188III	TCNNGA	2 cut(s)	335, 409
Hpy8I	GTNNAC	2 cut(s)	214, 366
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	6 cut(s)	4, 21, 91, 236, 386, 391
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 177, 308, 317, 356
HpyF3I	CTNAG	2 cut(s)	32, 78
Hsp92II	CATG	2 cut(s)	220, 268
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	11, 196, 219
LpnPI	CCDG	3 cut(s)	167, 171, 325
Lsp1109I	GCAGC	2 cut(s)	289, 370
LweI	GCATC	1 cut(s)	13
MalI	GATC	3 cut(s)	13, 198, 221
MboI	GATC	3 cut(s)	11, 196, 219
MboII	GAAGA	3 cut(s)	51, 308, 383
MhlI	GDGCHC	1 cut(s)	313
MlsI	TGGCCA	2 cut(s)	263, 359
MluCI	AATT	3 cut(s)	23, 121, 173
MluNI	TGGCCA	2 cut(s)	263, 359
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	8 cut(s)	74, 148, 202, 232, 241, 292, 387, 416
Mox20I	TGGCCA	2 cut(s)	263, 359
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	2 cut(s)	263, 359
Msp20I	TGGCCA	2 cut(s)	263, 359
MspA1I	CMGCKG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	5 cut(s)	88, 177, 308, 317, 356
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	11, 196, 219
NlaIII	CATG	2 cut(s)	220, 268
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	3 cut(s)	170, 304, 385
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	403
PstI	CTGCAG	1 cut(s)	393
PvuI	CGATCG	1 cut(s)	14
SatI	GCNGC	3 cut(s)	169, 303, 384
Sau3AI	GATC	3 cut(s)	11, 196, 219
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	7 cut(s)	57, 190, 213, 344, 352, 398, 444
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	389
SmlI	CTYRAG	2 cut(s)	227, 407
SmoI	CTYRAG	2 cut(s)	227, 407
Sse9I	AATT	3 cut(s)	23, 121, 173
SsiI	CCGC	3 cut(s)	43, 169, 180
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	6 cut(s)	7, 14, 195, 336, 398, 435
TasI	AATT	3 cut(s)	23, 121, 173
TauI	GCSGC	1 cut(s)	171
TscAI	CASTG	2 cut(s)	322, 393
TseI	GCWGC	2 cut(s)	302, 383
TspDTI	ATGAA	4 cut(s)	148, 309, 342, 360
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	2 cut(s)	322, 393
XapI	RAATTY	1 cut(s)	121
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.