Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

33296885 .. 33299840

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGATCAGCAAACACAGGTATGGAGGTGGCGAGGTCATCGGAATGTTTCCAAAGAGAGGACCAGGCCGTCATCCCCAAGCCTGATGGTATAGTGGGGCTTGTTGAGTCAGCTCTGGCAAAAGCTCCTGTTCAGAAGTTTGCTGACCGCATTTCTAAATTCTTTGTGCCACTGGTGATCATGCTTTCATTCTTTACCTGGCTTTCATGGTTTGTGGCTGGAAAATTCCATGGCTACCTGAAATCTTGGATACCGAAGTCCATGGATAGCTTTCAGCTTGCTCTCCAGTTTGGGATCTCTGTCATGGTTATTGCGTGCCCTTGTGCTCTAGGCCTAGCAACTCCTACTGCTGTCATGGTTGGTACGGGAGTCGGTGCATCCCAAGGTGTACTGATCAAAGGAGGTCAAGCATTAGAAAGTGCACATAAGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTACAATTGGGAAGCCACTGGTTATGGACTGAAATGTTTTTCAGAATCAAATCAACATCTGAGCATATTGTCTATATAATTATGGATGGGGACTTGGTTTGCCTTGCAAAAATGGGAACATCTGTAGAGGTGTACTTTCTTGAATATGAATCCTGTAGTGCATCTTCTCTTCTACTTGATTTTTTGGAATATGGATTCATGCTATGTCAGTTTAGAAAAAACTATTTGGATGGAAGCTTAATGGCAACACATGGAAGCTTAGGTGCCATGCAGAAGTCATTATTTGAATTTGGTGCCAATGAAGTTGGTATTGATACTGTTATAGCCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAAGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGAACTAGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

332

Amino Acids

36.09

Weight (kDa)

5.3

Isoelectric Point (pI)

23.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccB1I	GGYRCC	2 cut(s)	725, 755
AciI	CCGC	2 cut(s)	148, 899
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	3 cut(s)	158, 224, 749
AfaI	GTAC	3 cut(s)	364, 390, 596
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	605, 749, 843
AhlI	ACTAGT	1 cut(s)	892
AjnI	CCWGG	2 cut(s)	63, 197
AluBI	AGCT	7 cut(s)	113, 125, 270, 277, 699, 720, 846
AluI	AGCT	7 cut(s)	113, 125, 270, 277, 699, 720, 846
Alw21I	GWGCWC	2 cut(s)	328, 424
Alw44I	GTGCAC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	2 cut(s)	66, 331
ApaLI	GTGCAC	1 cut(s)	420
ApeKI	GCWGC	1 cut(s)	950
ApoI	RAATTY	3 cut(s)	158, 224, 749
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	187, 797, 876
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	2 cut(s)	320, 424
BaeI	ACNNNNGTAYC	4 cut(s)	242, 275, 354, 387
BanI	GGYRCC	2 cut(s)	725, 755
BarI	GAAGNNNNNNTAC	2 cut(s)	610, 642
Bbv12I	GWGCWC	2 cut(s)	328, 424
BbvI	GCAGC	1 cut(s)	962
BccI	CCATC	5 cut(s)	80, 542, 686, 853, 863
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciT130I	CCWGG	2 cut(s)	65, 199
BciVI	GTATCC	1 cut(s)	243
BclI	TGATCA	3 cut(s)	177, 393, 802
BcuI	ACTAGT	1 cut(s)	892
BfaI	CTAG	3 cut(s)	329, 335, 893
BfmI	CTRYAG	2 cut(s)	585, 616
BfuI	GTATCC	1 cut(s)	243
BisI	GCNGC	2 cut(s)	900, 951
BlsI	GCNGC	2 cut(s)	901, 952
Bme1390I	CCNGG	2 cut(s)	65, 199
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	727, 757
BmrFI	CCNGG	2 cut(s)	65, 199
BmsI	GCATC	3 cut(s)	386, 632, 882
BpmI	CTGGAG	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	721
BsaJI	CCNNGG	3 cut(s)	229, 261, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	3 cut(s)	177, 286, 485
Bse3DI	GCAATG	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	65, 199
BseDI	CCNNGG	3 cut(s)	229, 261, 382
BseGI	GGATG	4 cut(s)	72, 377, 553, 697
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	3 cut(s)	177, 286, 485
BseSI	GKGCMC	2 cut(s)	320, 424
BseXI	GCAGC	1 cut(s)	962
BshFI	GGCC	2 cut(s)	68, 333
BshNI	GGYRCC	2 cut(s)	725, 755
BsiHKAI	GWGCWC	2 cut(s)	328, 424
BslFI	GGGAC	2 cut(s)	472, 566
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	472, 566
BsnI	GGCC	2 cut(s)	68, 333
Bsp1286I	GDGCHC	3 cut(s)	320, 328, 424
Bsp143I	GATC	5 cut(s)	5, 177, 294, 393, 802
Bsp19I	CCATGG	2 cut(s)	229, 261
BspACI	CCGC	2 cut(s)	148, 899
BspANI	GGCC	2 cut(s)	68, 333
BspCNI	CTCAG	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	727, 757
BspPI	GGATC	1 cut(s)	302
BspT107I	GGYRCC	2 cut(s)	725, 755
BsrDI	GCAATG	1 cut(s)	936
BsrI	ACTGG	3 cut(s)	177, 286, 485
BssECI	CCNNGG	3 cut(s)	229, 261, 382
BssMI	GATC	5 cut(s)	5, 177, 294, 393, 802
BssT1I	CCWWGG	3 cut(s)	229, 261, 382
Bst2UI	CCWGG	2 cut(s)	65, 199
Bst4CI	ACNGT	2 cut(s)	781, 853
Bst6I	CTCTTC	2 cut(s)	636, 965
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstC8I	GCNNGC	4 cut(s)	279, 316, 837, 928
BstDEI	CTNAG	2 cut(s)	522, 721
BstDSI	CCRYGG	2 cut(s)	229, 261
BstF5I	GGATG	4 cut(s)	72, 377, 553, 697
BstKTI	GATC	5 cut(s)	8, 180, 297, 396, 805
BstMBI	GATC	5 cut(s)	5, 177, 294, 393, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	923, 947
BstNI	CCWGG	2 cut(s)	65, 199
BstSCI	CCNGG	2 cut(s)	63, 197
BstSFI	CTRYAG	2 cut(s)	585, 616
BstSLI	GKGCMC	2 cut(s)	320, 424
BstV1I	GCAGC	1 cut(s)	962
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	68, 333
BtgI	CCRYGG	2 cut(s)	229, 261
BtgZI	GCGATG	1 cut(s)	872
BtsCI	GGATG	4 cut(s)	72, 377, 553, 697
BtsIMutI	CAGTG	3 cut(s)	170, 478, 849
Cac8I	GCNNGC	4 cut(s)	279, 316, 837, 928
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	3 cut(s)	363, 389, 595
CviAII	CATG	9 cut(s)	181, 207, 230, 262, 304, 355, 661, 713, 730
CviQI	GTAC	3 cut(s)	363, 389, 595
DdeI	CTNAG	2 cut(s)	522, 721
DpnI	GATC	5 cut(s)	7, 179, 296, 395, 804
DpnII	GATC	5 cut(s)	5, 177, 294, 393, 802
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	2 cut(s)	636, 965
EarI	CTCTTC	2 cut(s)	636, 965
Eco130I	CCWWGG	3 cut(s)	229, 261, 382
Eco147I	AGGCCT	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	63, 197
EcoT14I	CCWWGG	3 cut(s)	229, 261, 382
ErhI	CCWWGG	3 cut(s)	229, 261, 382
FaeI	CATG	9 cut(s)	184, 210, 233, 265, 307, 358, 664, 716, 733
FaqI	GGGAC	2 cut(s)	472, 566
FatI	CATG	9 cut(s)	180, 206, 229, 261, 303, 354, 660, 712, 729
FbaI	TGATCA	3 cut(s)	177, 393, 802
Fnu4HI	GCNGC	2 cut(s)	900, 951
FokI	GGATG	4 cut(s)	59, 364, 560, 704
Fsp4HI	GCNGC	2 cut(s)	900, 951
FspBI	CTAG	3 cut(s)	329, 335, 893
GluI	GCNGC	2 cut(s)	900, 951
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	68, 333
Hin1II	CATG	9 cut(s)	184, 210, 233, 265, 307, 358, 664, 716, 733
HindIII	AAGCTT	2 cut(s)	697, 718
HinfI	GANTC	7 cut(s)	107, 369, 460, 507, 611, 657, 881
HphI	GGTGA	3 cut(s)	187, 797, 876
Hpy166II	GTNNAC	4 cut(s)	389, 422, 433, 595
Hpy188I	TCNGA	4 cut(s)	43, 135, 506, 523
Hpy188III	TCNNGA	1 cut(s)	602
Hpy8I	GTNNAC	4 cut(s)	389, 422, 433, 595
HpyAV	CCTTC	1 cut(s)	820
HpyCH4III	ACNGT	2 cut(s)	781, 853
HpyCH4V	TGCA	8 cut(s)	377, 422, 438, 569, 623, 733, 835, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	923, 947
HpyF3I	CTNAG	2 cut(s)	522, 721
Hsp92II	CATG	9 cut(s)	184, 210, 233, 265, 307, 358, 664, 716, 733
Ksp22I	TGATCA	3 cut(s)	177, 393, 802
Kzo9I	GATC	5 cut(s)	5, 177, 294, 393, 802
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	1 cut(s)	962
LweI	GCATC	3 cut(s)	386, 632, 882
MaeI	CTAG	3 cut(s)	329, 335, 893
MalI	GATC	5 cut(s)	7, 179, 296, 395, 804
MboI	GATC	5 cut(s)	5, 177, 294, 393, 802
MboII	GAAGA	3 cut(s)	618, 623, 982
MfeI	CAATTG	3 cut(s)	467, 918, 942
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	3 cut(s)	320, 328, 424
MluCI	AATT	8 cut(s)	158, 224, 467, 540, 749, 830, 918, 942
MlyI	GAGTC	4 cut(s)	116, 378, 454, 875
MnlI	CCTC	7 cut(s)	19, 27, 52, 395, 583, 940, 993
MseI	TTAA	1 cut(s)	701
MslI	CAYNNNNRTG	2 cut(s)	20, 43
MspR9I	CCNGG	2 cut(s)	65, 199
MunI	CAATTG	3 cut(s)	467, 918, 942
MvaI	CCWGG	2 cut(s)	65, 199
MwoI	GCNNNNNNNGC	2 cut(s)	923, 947
NcoI	CCATGG	2 cut(s)	229, 261
NdeII	GATC	5 cut(s)	5, 177, 294, 393, 802
NlaIII	CATG	9 cut(s)	184, 210, 233, 265, 307, 358, 664, 716, 733
NlaIV	GGNNCC	2 cut(s)	727, 757
PceI	AGGCCT	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	507, 611, 657
PkrI	GCNGC	2 cut(s)	901, 952
PleI	GAGTC	4 cut(s)	115, 377, 454, 875
PpsI	GAGTC	4 cut(s)	115, 377, 454, 875
Psp6I	CCWGG	2 cut(s)	63, 197
PspGI	CCWGG	2 cut(s)	63, 197
PspN4I	GGNNCC	2 cut(s)	727, 757
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	3 cut(s)	364, 390, 596
RsaNI	GTAC	3 cut(s)	363, 389, 595
RseI	CAYNNNNRTG	2 cut(s)	20, 43
SaqAI	TTAA	1 cut(s)	701
SatI	GCNGC	2 cut(s)	900, 951
Sau3AI	GATC	5 cut(s)	5, 177, 294, 393, 802
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	4 cut(s)	116, 378, 454, 875
ScrFI	CCNGG	2 cut(s)	65, 199
SduI	GDGCHC	3 cut(s)	320, 328, 424
SfaNI	GCATC	3 cut(s)	386, 632, 882
SfcI	CTRYAG	2 cut(s)	585, 616
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	20, 43
SpeI	ACTAGT	1 cut(s)	892
Sse9I	AATT	8 cut(s)	158, 224, 467, 540, 749, 830, 918, 942
SseBI	AGGCCT	1 cut(s)	333
SsiI	CCGC	2 cut(s)	148, 899
SspMI	CTAG	3 cut(s)	329, 335, 893
StuI	AGGCCT	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	63, 197
StyI	CCWWGG	3 cut(s)	229, 261, 382
TaaI	ACNGT	2 cut(s)	781, 853
TaqI	TCGA	1 cut(s)	447
TasI	AATT	8 cut(s)	158, 224, 467, 540, 749, 830, 918, 942
TatI	WGTACW	2 cut(s)	388, 594
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	3 cut(s)	507, 611, 657
Tru1I	TTAA	1 cut(s)	701
Tru9I	TTAA	1 cut(s)	701
TscAI	CASTG	3 cut(s)	177, 485, 856
TseI	GCWGC	1 cut(s)	950
TspDTI	ATGAA	6 cut(s)	177, 195, 624, 649, 777, 983
TspRI	CASTG	3 cut(s)	177, 485, 856
VneI	GTGCAC	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	3 cut(s)	158, 224, 749
XspI	CTAG	3 cut(s)	329, 335, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.