Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003465.1

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

200050 .. 200771

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003465.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgaatgtgattattgatgttgtaggtggactgcattgtgttcgacaagacagggactctacaattgggaagccactggttgttaacccacgactcatgaaaaatatagtgcttcgggaattctatgaacttgttgctgcagctgaggttaacagtgaacaccccttggtcaaggccattgttgagtatgccaaaaaattcagagaagatgaagagaatccagccgggccagaagcgcatgactttgcctccattaatggtcacggggtgaaggctattgttcagggcagggaaataattgtggggaacaagagcttgatggtggaccagaacattgcagttccactcgatgcagaagactacctagcagaagctgaagggctggctcaaactgggattctagtagccatagatggagaagtggctggagttctagcaatatctgatccactgaaaccaggtgctcaagaagtaattaccatactcaagtcaatgaatgttagaagcataatggtgacaggtgacaattggggaactgcaaattctattgccaatgtggcaaagcgaaacctgatcaccagaaagcagagaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

198

Amino Acids

21.44

Weight (kDa)

5.62

Isoelectric Point (pI)

25.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	3 cut(s)	119, 197, 541
AcuI	CTGAAG	1 cut(s)	396
AdeI	CACNNNGTG	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	3 cut(s)	143, 315, 374
AluI	AGCT	3 cut(s)	143, 315, 374
Alw21I	GWGCWC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	440
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	174, 227
ApeKI	GCWGC	2 cut(s)	137, 140
ApoI	RAATTY	3 cut(s)	119, 197, 541
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	227, 325
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	4 cut(s)	280, 526, 533, 568
AvaII	GGWCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	124, 152
BccI	CCATC	2 cut(s)	313, 407
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	226
BfaI	CTAG	3 cut(s)	365, 401, 434
BfmI	CTRYAG	1 cut(s)	138
BglI	GCCNNNNNGGC	1 cut(s)	557
BisI	GCNGC	2 cut(s)	138, 141
BlsI	GCNGC	2 cut(s)	139, 142
Bme1390I	CCNGG	2 cut(s)	226, 459
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	227, 325
BmrFI	CCNGG	2 cut(s)	226, 459
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	450, 470
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bse1I	ACTGG	2 cut(s)	81, 397
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	81, 397
BseXI	GCAGC	2 cut(s)	124, 152
BshFI	GGCC	2 cut(s)	176, 229
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	176, 229
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	445, 573
BspANI	GGCC	2 cut(s)	176, 229
BspCNI	CTCAG	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	81, 397
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	445, 573
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	2 cut(s)	448, 576
BstMBI	GATC	2 cut(s)	445, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 557
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	224, 457
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	124, 152
BstV2I	GAAGAC	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	176, 229
BtsIMutI	CAGTG	3 cut(s)	74, 160, 449
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	374
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	227, 325
CsiI	ACCWGGT	1 cut(s)	457
CviAII	CATG	2 cut(s)	97, 239
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	447, 575
DpnII	GATC	2 cut(s)	445, 573
DraIII	CACNNNGTG	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	100, 242
FaiI	YATR	8 cut(s)	98, 107, 126, 189, 240, 410, 482, 509
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	96, 238
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	2 cut(s)	138, 141
Fsp4HI	GCNGC	2 cut(s)	138, 141
FspBI	CTAG	3 cut(s)	365, 401, 434
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	2 cut(s)	138, 141
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	176, 229
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	100, 242
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HincII	GTYRAC	2 cut(s)	85, 151
HindII	GTYRAC	2 cut(s)	85, 151
HinfI	GANTC	4 cut(s)	56, 93, 217, 397
HpaI	GTTAAC	2 cut(s)	85, 151
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	4 cut(s)	280, 526, 533, 568
Hpy166II	GTNNAC	5 cut(s)	29, 85, 151, 158, 325
Hpy188I	TCNGA	2 cut(s)	203, 445
Hpy188III	TCNNGA	3 cut(s)	97, 116, 467
Hpy8I	GTNNAC	5 cut(s)	29, 85, 151, 158, 325
HpyAV	CCTTC	2 cut(s)	265, 371
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	5 cut(s)	34, 140, 338, 353, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 557
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	100, 242
HspAI	GCGC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	573
KspAI	GTTAAC	2 cut(s)	85, 151
Kzo9I	GATC	2 cut(s)	445, 573
Lsp1109I	GCAGC	2 cut(s)	124, 152
LweI	GCATC	1 cut(s)	340
MabI	ACCWGGT	1 cut(s)	457
MaeI	CTAG	3 cut(s)	365, 401, 434
MaeIII	GTNAC	3 cut(s)	260, 514, 521
MalI	GATC	2 cut(s)	447, 575
MboI	GATC	2 cut(s)	445, 573
MboII	GAAGA	3 cut(s)	218, 224, 368
MfeI	CAATTG	2 cut(s)	63, 526
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	7 cut(s)	63, 119, 197, 297, 474, 526, 541
MlyI	GAGTC	2 cut(s)	50, 87
MnlI	CCTC	2 cut(s)	139, 259
MseI	TTAA	3 cut(s)	84, 150, 255
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	2 cut(s)	226, 459
MunI	CAATTG	2 cut(s)	63, 526
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	235, 557
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	445, 573
NlaIII	CATG	2 cut(s)	100, 242
NmuCI	GTSAC	3 cut(s)	260, 514, 521
PagI	TCATGA	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	217, 397
PkrI	GCNGC	2 cut(s)	139, 142
PleI	GAGTC	2 cut(s)	50, 87
PpsI	GAGTC	2 cut(s)	50, 87
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspPI	GGNCC	2 cut(s)	227, 325
PstI	CTGCAG	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	84, 150, 255
SatI	GCNGC	2 cut(s)	138, 141
Sau3AI	GATC	2 cut(s)	445, 573
Sau96I	GGNCC	2 cut(s)	227, 325
SchI	GAGTC	2 cut(s)	50, 87
ScrFI	CCNGG	2 cut(s)	226, 459
SduI	GDGCHC	1 cut(s)	466
SetI	ASST	9 cut(s)	28, 145, 150, 317, 366, 376, 463, 523, 573
SexAI	ACCWGGT	1 cut(s)	457
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	465, 485
SmoI	CTYRAG	2 cut(s)	465, 485
Sse9I	AATT	7 cut(s)	63, 119, 197, 297, 474, 526, 541
SspMI	CTAG	3 cut(s)	365, 401, 434
StyD4I	CCNGG	2 cut(s)	224, 457
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	2 cut(s)	43, 348
TasI	AATT	7 cut(s)	63, 119, 197, 297, 474, 526, 541
TfiI	GAWTC	2 cut(s)	217, 397
Tru1I	TTAA	3 cut(s)	84, 150, 255
Tru9I	TTAA	3 cut(s)	84, 150, 255
TscAI	CASTG	3 cut(s)	81, 160, 456
TseFI	GTSAC	3 cut(s)	260, 514, 521
TseI	GCWGC	2 cut(s)	137, 140
Tsp45I	GTSAC	3 cut(s)	260, 514, 521
TspDTI	ATGAA	5 cut(s)	17, 113, 141, 225, 509
TspRI	CASTG	3 cut(s)	81, 160, 456
VpaK11BI	GGWCC	1 cut(s)	325
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	3 cut(s)	119, 197, 541
XspI	CTAG	3 cut(s)	365, 401, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.