Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

24793852 .. 24799298

Gene Structure 5447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1180400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTTACTGGTGATAACTGGGCTACAGCGGCAGCCAGTGCGATGGAGGTTGGCATTGATAAGGTGTATGCTGAGACGGATCCACTAGGAAAAGCTGATAGAATCAAAGAATTACAGTTACGATTATATAATAGTTACAGGGGTGATGAAAGGAATGGCTGTGGCAAATTGGCAATGATGGGAGATGGAATTAATGACTCGCCGGCTATGGTTGCAGGAGATGTTGGCATGGCAATTGGTGCTGGCACCGACGTAGCTATAGAAGCTGCTTATAGTTCTGATGAAGAGCAACTTGGAAGATGTAGTTACAGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

106

Amino Acids

11.04

Weight (kDa)

4.28

Isoelectric Point (pI)

18.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	74, 87
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	3 cut(s)	95, 257, 266
AluI	AGCT	3 cut(s)	95, 257, 266
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	74, 87
ApeKI	GCWGC	2 cut(s)	32, 266
AseI	ATTAAT	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	23, 155
BamHI	GGATCC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	44, 253
BccI	CCATC	3 cut(s)	37, 172, 179
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	2 cut(s)	24, 258
BisI	GCNGC	3 cut(s)	30, 33, 267
BlsI	GCNGC	3 cut(s)	31, 34, 268
BmiI	GGNNCC	2 cut(s)	81, 247
BmrI	ACTGGG	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	3 cut(s)	13, 23, 36
Bse3DI	GCAATG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	3 cut(s)	13, 23, 36
BseXI	GCAGC	2 cut(s)	44, 253
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	81, 247
BspPI	GGATC	2 cut(s)	74, 87
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	3 cut(s)	13, 23, 36
BssAI	RCCGGY	1 cut(s)	202
BssMI	GATC	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	279
BstAPI	GCANNNNNTGC	2 cut(s)	38, 239
BstC8I	GCNNGC	2 cut(s)	204, 244
BstDEI	CTNAG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 38, 212, 239, 263
BstSFI	CTRYAG	2 cut(s)	24, 258
BstV1I	GCAGC	2 cut(s)	44, 253
BstX2I	RGATCY	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	204, 244
Cfr10I	RCCGGY	1 cut(s)	202
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	8 cut(s)	23, 35, 95, 159, 206, 257, 266, 312
CviKI_1	RGCY	8 cut(s)	23, 35, 95, 159, 206, 257, 266, 312
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	232
FaiI	YATR	7 cut(s)	69, 127, 129, 209, 230, 260, 273
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	30, 33, 267
Fsp4HI	GCNGC	3 cut(s)	30, 33, 267
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	3 cut(s)	30, 33, 267
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	2 cut(s)	102, 197
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	23, 155
Hpy188I	TCNGA	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 38, 212, 239, 263
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	232
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	79
LguI	GCTCTTC	1 cut(s)	279
LpnPI	CCDG	6 cut(s)	4, 49, 124, 201, 216, 228
Lsp1109I	GCAGC	2 cut(s)	44, 253
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	4 cut(s)	4, 117, 134, 305
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	296, 309
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	4 cut(s)	110, 167, 189, 234
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	1 cut(s)	40
MroNI	GCCGGC	1 cut(s)	202
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	234
MwoI	GCNNNNNNNGC	5 cut(s)	29, 38, 212, 239, 263
NaeI	GCCGGC	1 cut(s)	204
NdeII	GATC	1 cut(s)	79
NgoMIV	GCCGGC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	2 cut(s)	81, 247
PciSI	GCTCTTC	1 cut(s)	279
PdiI	GCCGGC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	31, 34, 268
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PshBI	ATTAAT	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	81, 247
PsuI	RGATCY	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	3 cut(s)	30, 33, 267
Sau3AI	GATC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	191
SetI	ASST	6 cut(s)	51, 66, 97, 255, 259, 268
SfcI	CTRYAG	2 cut(s)	24, 258
Sse9I	AATT	4 cut(s)	110, 167, 189, 234
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	117
TaiI	ACGT	1 cut(s)	255
TasI	AATT	4 cut(s)	110, 167, 189, 234
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	2 cut(s)	32, 266
TspDTI	ATGAA	2 cut(s)	162, 297
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	43
VspI	ATTAAT	1 cut(s)	192
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.