Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

38130379 .. 38132927

Gene Structure 2549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG336100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGATGAGCTTGTTGGTTCTTGCATTGCTGAAAGTCAAGACACTGGGTCTTTGGCAACCTCATCAAGATTTGCAGTTGGCCAGTTGTCTACTTATCTGGCCTCAGGCCTGCAATTTCAATATCACCAACAGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTTACAATTGGGAAGCCACTGGTTGTTAACACACGACTCATGAAAAATATAGTGCTTCGAGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGACCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTACTGGTCACGGGGTGAAGGCTATTGTTCAGGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAATTGCAAATTCTATTGCCAATGAAGTTGGTATTGATACTGTTATAGCCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

299

Amino Acids

31.74

Weight (kDa)

4.6

Isoelectric Point (pI)

23.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	45 - 269	2.8e-32	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	89
AciI	CCGC	1 cut(s)	800
AclWI	GGATC	1 cut(s)	548
AcoI	YGGCCR	2 cut(s)	79, 276
AcsI	RAATTY	3 cut(s)	227, 305, 649
AcuI	CTGAAG	2 cut(s)	504, 726
AdeI	CACNNNGTG	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	119
AhdI	GACNNNNNGTC	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	4 cut(s)	10, 251, 423, 482
AluI	AGCT	4 cut(s)	10, 251, 423, 482
Alw21I	GWGCWC	1 cut(s)	574
AlwI	GGATC	1 cut(s)	548
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	5 cut(s)	79, 99, 106, 276, 335
ApeKI	GCWGC	3 cut(s)	245, 248, 851
ApoI	RAATTY	3 cut(s)	227, 305, 649
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	335, 433
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	6 cut(s)	116, 388, 634, 641, 698, 777
AvaII	GGWCC	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	103
BalI	TGGCCA	2 cut(s)	81, 278
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	574
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	232, 260, 863
BccI	CCATC	4 cut(s)	421, 515, 754, 764
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	1 cut(s)	567
BclI	TGATCA	1 cut(s)	703
BcnI	CCSGG	1 cut(s)	334
BfaI	CTAG	3 cut(s)	473, 509, 542
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	4 cut(s)	246, 249, 801, 852
BlsI	GCNGC	4 cut(s)	247, 250, 802, 853
Bme1390I	CCNGG	2 cut(s)	334, 567
Bme18I	GGWCC	1 cut(s)	433
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	335, 433
BmrFI	CCNGG	2 cut(s)	334, 567
BmrI	ACTGGG	2 cut(s)	54, 510
BmsI	GCATC	2 cut(s)	448, 783
BmuI	ACTGGG	2 cut(s)	54, 510
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	558, 578
BpuMI	CCSGG	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	5 cut(s)	49, 82, 189, 370, 505
Bse21I	CCTNAGG	1 cut(s)	103
Bse3DI	GCAATG	3 cut(s)	24, 441, 837
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	3 cut(s)	24, 441, 837
BseMII	CTCAG	2 cut(s)	117, 243
BseNI	ACTGG	5 cut(s)	49, 82, 189, 370, 505
BseXI	GCAGC	3 cut(s)	232, 260, 863
BshFI	GGCC	5 cut(s)	81, 101, 108, 278, 337
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	5 cut(s)	81, 101, 108, 278, 337
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	2 cut(s)	553, 703
BspACI	CCGC	1 cut(s)	800
BspANI	GGCC	5 cut(s)	81, 101, 108, 278, 337
BspCNI	CTCAG	2 cut(s)	116, 244
BspHI	TCATGA	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	1 cut(s)	548
BsrDI	GCAATG	3 cut(s)	24, 441, 837
BsrI	ACTGG	5 cut(s)	49, 82, 189, 370, 505
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	553, 703
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	263, 682, 754
Bst6I	CTCTTC	2 cut(s)	315, 866
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstC8I	GCNNGC	4 cut(s)	110, 492, 738, 829
BstDEI	CTNAG	2 cut(s)	103, 252
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	2 cut(s)	556, 706
BstMBI	GATC	2 cut(s)	553, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	343, 797, 824, 848
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	2 cut(s)	332, 565
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	232, 260, 863
BstV2I	GAAGAC	1 cut(s)	471
Bsu36I	CCTNAGG	1 cut(s)	103
BsuRI	GGCC	5 cut(s)	81, 101, 108, 278, 337
BtgZI	GCGATG	1 cut(s)	773
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	5 cut(s)	42, 182, 268, 557, 750
Cac8I	GCNNGC	4 cut(s)	110, 492, 738, 829
CaiI	CAGNNNCTG	1 cut(s)	482
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	335, 433
CsiI	ACCWGGT	1 cut(s)	565
CviAII	CATG	2 cut(s)	205, 347
DdeI	CTNAG	2 cut(s)	103, 252
DpnI	GATC	2 cut(s)	555, 705
DpnII	GATC	2 cut(s)	553, 703
DraIII	CACNNNGTG	1 cut(s)	376
DriI	GACNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	2 cut(s)	79, 276
Eam1104I	CTCTTC	2 cut(s)	315, 866
Eam1105I	GACNNNNNGTC	1 cut(s)	46
EarI	CTCTTC	2 cut(s)	315, 866
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	504, 726
Eco81I	CCTNAGG	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	208, 350
FaiI	YATR	9 cut(s)	206, 215, 234, 297, 348, 518, 590, 617, 686
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	204, 346
FbaI	TGATCA	1 cut(s)	703
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	4 cut(s)	246, 249, 801, 852
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	246, 249, 801, 852
FspBI	CTAG	3 cut(s)	473, 509, 542
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	4 cut(s)	246, 249, 801, 852
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	5 cut(s)	81, 101, 108, 278, 337
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	2 cut(s)	208, 350
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	2 cut(s)	193, 259
HindII	GTYRAC	2 cut(s)	193, 259
HinfI	GANTC	5 cut(s)	163, 201, 325, 505, 782
HpaI	GTTAAC	2 cut(s)	193, 259
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	6 cut(s)	116, 388, 634, 641, 698, 777
Hpy166II	GTNNAC	6 cut(s)	90, 136, 193, 259, 266, 433
Hpy188I	TCNGA	2 cut(s)	311, 553
Hpy188III	TCNNGA	5 cut(s)	38, 66, 205, 224, 575
Hpy8I	GTNNAC	6 cut(s)	90, 136, 193, 259, 266, 433
HpyAV	CCTTC	3 cut(s)	373, 479, 721
HpyCH4III	ACNGT	3 cut(s)	263, 682, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	343, 797, 824, 848
HpyF3I	CTNAG	2 cut(s)	103, 252
Hsp92II	CATG	2 cut(s)	208, 350
HspAI	GCGC	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	703
KspAI	GTTAAC	2 cut(s)	193, 259
Kzo9I	GATC	2 cut(s)	553, 703
Lsp1109I	GCAGC	3 cut(s)	232, 260, 863
LweI	GCATC	2 cut(s)	448, 783
MabI	ACCWGGT	1 cut(s)	565
MaeI	CTAG	3 cut(s)	473, 509, 542
MaeIII	GTNAC	3 cut(s)	368, 622, 629
MalI	GATC	2 cut(s)	555, 705
MboI	GATC	2 cut(s)	553, 703
MboII	GAAGA	4 cut(s)	326, 332, 476, 883
MfeI	CAATTG	4 cut(s)	171, 634, 819, 843
MhlI	GDGCHC	1 cut(s)	574
MlsI	TGGCCA	2 cut(s)	81, 278
MluNI	TGGCCA	2 cut(s)	81, 278
MlyI	GAGTC	3 cut(s)	157, 195, 776
MnlI	CCTC	6 cut(s)	70, 112, 247, 367, 841, 894
Mox20I	TGGCCA	2 cut(s)	81, 278
MscI	TGGCCA	2 cut(s)	81, 278
MseI	TTAA	2 cut(s)	192, 258
MslI	CAYNNNNRTG	1 cut(s)	620
Msp20I	TGGCCA	2 cut(s)	81, 278
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	334, 567
MunI	CAATTG	4 cut(s)	171, 634, 819, 843
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	4 cut(s)	343, 797, 824, 848
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	2 cut(s)	553, 703
NlaIII	CATG	2 cut(s)	208, 350
NmuCI	GTSAC	3 cut(s)	368, 622, 629
PagI	TCATGA	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	325, 505
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	4 cut(s)	247, 250, 802, 853
PleI	GAGTC	3 cut(s)	157, 195, 776
PpsI	GAGTC	3 cut(s)	157, 195, 776
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspPI	GGNCC	2 cut(s)	335, 433
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	482
PvuII	CAGCTG	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	620
SaqAI	TTAA	2 cut(s)	192, 258
SatI	GCNGC	4 cut(s)	246, 249, 801, 852
Sau3AI	GATC	2 cut(s)	553, 703
Sau96I	GGNCC	2 cut(s)	335, 433
SchI	GAGTC	3 cut(s)	157, 195, 776
ScrFI	CCNGG	2 cut(s)	334, 567
SduI	GDGCHC	1 cut(s)	574
SexAI	ACCWGGT	1 cut(s)	565
SfaNI	GCATC	2 cut(s)	448, 783
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	2 cut(s)	573, 593
SmoI	CTYRAG	2 cut(s)	573, 593
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	800
SspMI	CTAG	3 cut(s)	473, 509, 542
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	332, 565
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	3 cut(s)	263, 682, 754
TaqI	TCGA	3 cut(s)	150, 223, 456
TauI	GCSGC	1 cut(s)	803
TfiI	GAWTC	2 cut(s)	325, 505
Tru1I	TTAA	2 cut(s)	192, 258
Tru9I	TTAA	2 cut(s)	192, 258
TscAI	CASTG	5 cut(s)	49, 189, 268, 564, 757
TseFI	GTSAC	3 cut(s)	368, 622, 629
TseI	GCWGC	3 cut(s)	245, 248, 851
Tsp45I	GTSAC	3 cut(s)	368, 622, 629
TspDTI	ATGAA	6 cut(s)	221, 249, 333, 617, 678, 884
TspRI	CASTG	5 cut(s)	49, 189, 268, 564, 757
Van91I	CCANNNNNTGG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	3 cut(s)	227, 305, 649
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	3 cut(s)	473, 509, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.