Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

14328303 .. 14329180

Gene Structure 878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1138700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTTGGATCAACTAAACATGTGACGGAAGCTAAGGAATTTGAGGTGCACACAGGAGCTGGAGTTAGTGGAAAAGTTGGCGACAAAATGGTTTTGGCTGGGAACAAGAGGCTCATGCGGGAAAACAATGTCCAGGTTGGTCTTGAGGTTGACAAGGAAGTTTCAGAACATGAGAATCTGGTTCGAACATGTGTGTTGGTTGCCATTGATGGAAAGATTGCTGGGTCATTTGCTGTAACTGGTCCAGTGAAGCCAGAGGCTGCAAGAGTCATCTCTTATCTTCAATTGGTGAACGTTACAAGCATCATGGTTACTGCTGATAACTGGGCTGCAGAAGCAGCCATTGCGAAGGAGGTTGGCATTGATAAGATGAAAGGAATGGCGGTGGCGATGGTGGGAGATGGAATCAATGACTCCCCGCCTTTAGTTGCAGAAGATGTTGGCATGGCAATTGGTGCTGTCACCGACGTAGCTATAGAAGCTGCGGATATAGTTTTGATGAAGAGCAACTTGGAAGATGTGGTTATAGCCATTGATCTCTCTAGAAAGACCATGTCTCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

189

Amino Acids

19.78

Weight (kDa)

4.9

Isoelectric Point (pI)

21.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	22 - 122	4.2e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	118, 383, 419, 485
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	38
AflIII	ACRYGT	2 cut(s)	19, 188
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	4 cut(s)	32, 59, 473, 482
AluI	AGCT	4 cut(s)	32, 59, 473, 482
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	561
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	2 cut(s)	59, 260
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	4 cut(s)	260, 329, 338, 482
ApoI	RAATTY	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	301, 454
AsuII	TTCGAA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	4 cut(s)	247, 316, 350, 469
BccI	CCATC	3 cut(s)	203, 385, 395
BciT130I	CCWGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	2 cut(s)	330, 474
BisI	GCNGC	4 cut(s)	261, 330, 339, 483
BlsI	GCNGC	4 cut(s)	262, 331, 340, 484
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	134
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	164
BsaXI	ACNNNNNCTCC	3 cut(s)	48, 78, 541
Bse1I	ACTGG	3 cut(s)	244, 245, 329
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	342
BseNI	ACTGG	3 cut(s)	244, 245, 329
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	4 cut(s)	247, 316, 350, 469
BseYI	CCCAGC	2 cut(s)	98, 221
BsiHKAI	GWGCWC	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	561
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	8, 535
BspACI	CCGC	4 cut(s)	118, 383, 419, 485
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	497
BspT104I	TTCGAA	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	244, 245, 329
BssMI	GATC	2 cut(s)	8, 535
Bst2UI	CCWGG	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	497
BstAPI	GCANNNNNTGC	2 cut(s)	344, 455
BstBI	TTCGAA	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	11, 538
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	2 cut(s)	8, 535
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 338, 344, 455, 479
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	23, 192
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	2 cut(s)	330, 474
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	4 cut(s)	247, 316, 350, 469
BtgZI	GCGATG	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	252
CaiI	CAGNNNCTG	2 cut(s)	59, 260
Cfr13I	GGNCC	1 cut(s)	242
CviAII	CATG	7 cut(s)	20, 115, 170, 189, 307, 445, 553
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	2 cut(s)	10, 537
DpnII	GATC	2 cut(s)	8, 535
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	7 cut(s)	23, 118, 173, 192, 310, 448, 556
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FatI	CATG	7 cut(s)	19, 114, 169, 188, 306, 444, 552
FauI	CCCGC	2 cut(s)	111, 426
Fnu4HI	GCNGC	4 cut(s)	261, 330, 339, 483
Fsp4HI	GCNGC	4 cut(s)	261, 330, 339, 483
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	4 cut(s)	261, 330, 339, 483
GsaI	CCCAGC	2 cut(s)	102, 225
GsuI	CTGGAG	1 cut(s)	81
Hin1II	CATG	7 cut(s)	23, 118, 173, 192, 310, 448, 556
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	4 cut(s)	175, 267, 405, 413
HphI	GGTGA	2 cut(s)	301, 454
Hpy166II	GTNNAC	3 cut(s)	49, 151, 292
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	143, 543
Hpy8I	GTNNAC	3 cut(s)	49, 151, 292
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	1 cut(s)	343
HpyCH4IV	ACGT	2 cut(s)	294, 468
HpyCH4V	TGCA	4 cut(s)	49, 263, 332, 431
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 338, 344, 455, 479
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	2 cut(s)	294, 468
Hsp92II	CATG	7 cut(s)	23, 118, 173, 192, 310, 448, 556
Kzo9I	GATC	2 cut(s)	8, 535
LguI	GCTCTTC	1 cut(s)	497
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	4 cut(s)	247, 316, 350, 469
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	2 cut(s)	294, 468
MaeIII	GTNAC	5 cut(s)	22, 235, 295, 310, 460
MalI	GATC	2 cut(s)	10, 537
MboI	GATC	2 cut(s)	8, 535
MboII	GAAGA	4 cut(s)	272, 446, 514, 527
MfeI	CAATTG	2 cut(s)	284, 450
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	3 cut(s)	38, 284, 450
MlyI	GAGTC	2 cut(s)	276, 407
MnlI	CCTC	5 cut(s)	37, 102, 139, 250, 346
MspR9I	CCNGG	1 cut(s)	134
MunI	CAATTG	2 cut(s)	284, 450
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	5 cut(s)	335, 338, 344, 455, 479
NdeII	GATC	2 cut(s)	8, 535
NlaIII	CATG	7 cut(s)	23, 118, 173, 192, 310, 448, 556
NmuCI	GTSAC	2 cut(s)	22, 460
NspI	RCATGY	2 cut(s)	23, 192
NspV	TTCGAA	1 cut(s)	184
PciI	ACATGT	2 cut(s)	19, 188
PciSI	GCTCTTC	1 cut(s)	497
PfeI	GAWTC	2 cut(s)	175, 405
PflFI	GACNNNGTC	1 cut(s)	553
PkrI	GCNGC	4 cut(s)	262, 331, 340, 484
PleI	GAGTC	2 cut(s)	275, 407
PpsI	GAGTC	2 cut(s)	275, 407
PscI	ACATGT	2 cut(s)	19, 188
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	132
PspFI	CCCAGC	2 cut(s)	98, 221
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	334
PstNI	CAGNNNCTG	2 cut(s)	59, 260
PsyI	GACNNNGTC	1 cut(s)	553
SapI	GCTCTTC	1 cut(s)	497
SatI	GCNGC	4 cut(s)	261, 330, 339, 483
Sau3AI	GATC	2 cut(s)	8, 535
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	2 cut(s)	276, 407
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	2 cut(s)	330, 474
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	38, 284, 450
SsiI	CCGC	4 cut(s)	118, 383, 419, 485
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	132
TaiI	ACGT	2 cut(s)	297, 471
TaqI	TCGA	1 cut(s)	184
TasI	AATT	3 cut(s)	38, 284, 450
TfiI	GAWTC	2 cut(s)	175, 405
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	2 cut(s)	22, 460
TseI	GCWGC	4 cut(s)	260, 329, 338, 482
Tsp45I	GTSAC	2 cut(s)	22, 460
TspDTI	ATGAA	2 cut(s)	386, 515
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	553
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	542
XceI	RCATGY	2 cut(s)	23, 192
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.