Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000221.1

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

2020 .. 2777

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000221.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgaagagaattaatccagccgggccagaagcgcatgactttgtctccattactggtcacggggtgaaggctattgttcggggtagggaaataattgtggggaacaagagcttgatggtggaccagaacattgcagttccactcgatgcagaagactacctagcagaagctgaagggctggctcaaactgggattctagtagccatagatggagaagtggccggagttctagcaatatctgatccactgaaaccaggtgctcaagaagtaattaccatactcaagtcaatgagtgttagaagcataatggtgacaggtgacaattggggaactgcaaattctattgccaatgaagttggtattgatgctgttatagccgaagcgaaacctgaccagaaagcagagaaagtgaaagaattgcaggcttcaggctacattgtggcgatggtgggagatggcatcaatgactcaccagcacttgtggcggcagatgtaggaatggcaattggtgctggcactgacattgcaattgaggcagcagacattgtgctaatgaagagcaacttggaggatgtgataactgccattgatctttcaactttcaaggaaaaccttcacccgtattcgtttgaactacatttgggctttgggatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

218

Amino Acids

22.73

Weight (kDa)

4.45

Isoelectric Point (pI)

18.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	192, 411
AdeI	CACNNNGTG	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	597, 604, 632
AjnI	CCWGG	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AluBI	AGCT	2 cut(s)	111, 170
AluI	AGCT	2 cut(s)	111, 170
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	23, 219
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	337
AseI	ATTAAT	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	23, 121
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	5 cut(s)	76, 322, 329, 462, 608
AvaII	GGWCC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	4 cut(s)	109, 203, 439, 449
BciT130I	CCWGG	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	3 cut(s)	161, 197, 230
BisI	GCNGC	2 cut(s)	486, 537
BlsI	GCNGC	2 cut(s)	487, 538
Bme1390I	CCNGG	2 cut(s)	22, 255
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	23, 121
BmrFI	CCNGG	2 cut(s)	22, 255
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	136, 355, 468
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	246, 266
BpuMI	CCSGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse1I	ACTGG	2 cut(s)	58, 193
Bse3DI	GCAATG	2 cut(s)	129, 522
BseBI	CCWGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	577
BseMI	GCAATG	2 cut(s)	129, 522
BseNI	ACTGG	2 cut(s)	58, 193
BseXI	GCAGC	1 cut(s)	548
BshFI	GGCC	2 cut(s)	25, 221
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	21, 222
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	25, 221
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	241, 589
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	2 cut(s)	25, 221
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	551
BsrDI	GCAATG	2 cut(s)	129, 522
BsrI	ACTGG	2 cut(s)	58, 193
BssMI	GATC	2 cut(s)	241, 589
Bst2UI	CCWGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	180, 423, 514
BstF5I	GGATG	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	244, 592
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	241, 589
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 374, 482, 509, 533
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	20, 253
BstV1I	GCAGC	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	25, 221
BtgZI	GCGATG	1 cut(s)	458
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	2 cut(s)	245, 516
Cac8I	GCNNGC	3 cut(s)	180, 423, 514
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	23, 121
CsiI	ACCWGGT	1 cut(s)	253
CviAII	CATG	1 cut(s)	35
DpnI	GATC	2 cut(s)	243, 591
DpnII	GATC	2 cut(s)	241, 589
DraIII	CACNNNGTG	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	192, 411
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	38
FaiI	YATR	6 cut(s)	36, 206, 278, 305, 374, 655
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	486, 537
FokI	GGATG	1 cut(s)	584
Fsp4HI	GCNGC	2 cut(s)	486, 537
FspBI	CTAG	3 cut(s)	161, 197, 230
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	486, 537
HaeIII	GGCC	2 cut(s)	25, 221
HapII	CCGG	2 cut(s)	21, 222
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	193, 467
HpaII	CCGG	2 cut(s)	21, 222
HphI	GGTGA	5 cut(s)	76, 322, 329, 462, 608
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	61, 167, 623
HpyCH4V	TGCA	5 cut(s)	134, 149, 335, 421, 527
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 374, 482, 509, 533
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	241, 589
LguI	GCTCTTC	1 cut(s)	551
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	3 cut(s)	136, 355, 468
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	3 cut(s)	161, 197, 230
MaeIII	GTNAC	3 cut(s)	56, 310, 317
MalI	GATC	2 cut(s)	243, 591
MboI	GATC	2 cut(s)	241, 589
MboII	GAAGA	3 cut(s)	16, 164, 568
MfeI	CAATTG	3 cut(s)	322, 504, 528
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	8 cut(s)	9, 93, 270, 322, 337, 416, 504, 528
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	2 cut(s)	526, 562
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	2 cut(s)	21, 222
MspR9I	CCNGG	2 cut(s)	22, 255
MunI	CAATTG	3 cut(s)	322, 504, 528
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	5 cut(s)	31, 374, 482, 509, 533
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	241, 589
NlaIII	CATG	1 cut(s)	38
NmuCI	GTSAC	3 cut(s)	56, 310, 317
PciSI	GCTCTTC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	193
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	487, 538
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	23, 121
PstNI	CAGNNNCTG	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	2 cut(s)	486, 537
Sau3AI	GATC	2 cut(s)	241, 589
Sau96I	GGNCC	2 cut(s)	23, 121
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	22, 255
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	7 cut(s)	113, 162, 172, 259, 319, 391, 615
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	3 cut(s)	136, 355, 468
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	261, 281
SmoI	CTYRAG	2 cut(s)	261, 281
Sse9I	AATT	8 cut(s)	9, 93, 270, 322, 337, 416, 504, 528
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	3 cut(s)	161, 197, 230
StyD4I	CCNGG	2 cut(s)	20, 253
TaqI	TCGA	1 cut(s)	144
TasI	AATT	8 cut(s)	9, 93, 270, 322, 337, 416, 504, 528
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	2 cut(s)	252, 523
TseFI	GTSAC	3 cut(s)	56, 310, 317
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	3 cut(s)	56, 310, 317
TspDTI	ATGAA	3 cut(s)	17, 366, 569
TspRI	CASTG	2 cut(s)	252, 523
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	121
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	3 cut(s)	161, 197, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.