Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

11866164 .. 11867909

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0072400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCAGAAGAAATATCCAGTAAAGTTCCTGAAGCACATCCAATGAATGGTGGAGATGGGCCCAACAGCTATGCCAAGAACTCAACTTACCAGGAGTCATATGTTTGGATAGTAGGAGTTGTGGGTGTTGCTAAAGAGCTTCTAAACAAGGCAATTCTAGAAAAGCTTGACATAGACATCACGCTGTTGTCCAACACCTTTCACATTGCAGATCTGGGTTGCTCTGTTGGTCCAAATACATTTTATTCAGTGGAAAATATACTTGAAGCAGTGCAGTCCAAGTATCAAATCCAGGGGCAGAATTCCCAAATCCCAGAATTTCAAGTTTTCTTCAATGATCATGCTCAAAATGATTTCAACATGCTTTTCAAATCCATCCCTCAGAACAGGCAATACTTTGCAGTTGGTGTGCCTGAAGCGGTAGTGGACAGCAGCAGTTCTGCTTGGAATAAAGGACGAATCCATTATTCAAATTCCACAGATGAAGCCGCCCCGATGGAACTCCTCACTCGCTCCCATTCTCAGGCAAATATGACCTTACAATTTCTAGGATTATGCCTCATGGACATGGCTAGAAAGGGAGACGTTAGTGAAGAGAAAGTAGATTCATTTAACATACCTATGTATACCATGTCTCCCCAAGAACTGAAAACTGCTGTAGAACGAAATGGATGTTTTAGTATAGAGATAATGTCAGACTTACCTCATCATCAGTTGGTAGATGACACTATCTCCCTATCTCAACTACTTGCCTCTCACCTGAGGGCGGGCATGGAGGGGATCGTCAAGCAGCAATTTGGAGAAGAAATCATAGATGAGCTGTTTGACTTGTATCGGAATAAATGTGAAGAGCATGCCTCCATATTTAAGTCAGGGAAGTCATGTAACTTTCTTGTTGTGCTTAGGCGCACTGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

306

Amino Acids

34.22

Weight (kDa)

4.95

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	58 - 138	1.5e-26	SAM dependent carboxyl methyltransferase
Methyltransf_7	PF03492	173 - 303	1.3e-28	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	626
AciI	CCGC	3 cut(s)	419, 489, 767
AclWI	GGATC	1 cut(s)	788
AcsI	RAATTY	3 cut(s)	301, 317, 472
AcuI	CTGAAG	2 cut(s)	51, 435
AfiI	CCNNNNNNNGG	3 cut(s)	47, 523, 766
AgsI	TTSAA	6 cut(s)	266, 323, 334, 358, 370, 471
AjnI	CCWGG	2 cut(s)	90, 291
AluBI	AGCT	4 cut(s)	69, 139, 166, 820
AluI	AGCT	4 cut(s)	69, 139, 166, 820
Alw26I	GTCTC	2 cut(s)	576, 639
AlwI	GGATC	1 cut(s)	788
AoxI	GGCC	1 cut(s)	59
ApaI	GGGCCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	432, 790
ApoI	RAATTY	3 cut(s)	301, 317, 472
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	3 cut(s)	59, 60, 230
AsuHPI	GGTGA	1 cut(s)	749
AvaII	GGWCC	1 cut(s)	230
AxyI	CCTNAGG	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	444, 802
BccI	CCATC	3 cut(s)	50, 383, 490
BciT130I	CCWGG	2 cut(s)	92, 293
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	576, 639
BfaI	CTAG	3 cut(s)	158, 548, 573
BfmI	CTRYAG	2 cut(s)	657, 912
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	3 cut(s)	433, 489, 791
BlsI	GCNGC	3 cut(s)	434, 490, 792
Bme1390I	CCNGG	2 cut(s)	92, 293
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	59, 60, 230
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	92, 293
BplI	GAGNNNNNCTC	2 cut(s)	842, 874
Bpu10I	CCTNAGC	1 cut(s)	902
BsaJI	CCNNGG	1 cut(s)	292
BsaXI	ACNNNNNCTCC	4 cut(s)	619, 649, 716, 746
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 523, 766
Bse1I	ACTGG	1 cut(s)	18
Bse21I	CCTNAGG	1 cut(s)	761
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	92, 293
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	3 cut(s)	37, 375, 677
BseLI	CCNNNNNNNGG	3 cut(s)	47, 523, 766
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	395, 536, 752
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	444, 802
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	61
BslI	CCNNNNNNNGG	3 cut(s)	47, 523, 766
BsmAI	GTCTC	2 cut(s)	576, 639
BsmBI	CGTCTC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	61
Bsp120I	GGGCCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	211, 337, 780
BspACI	CCGC	3 cut(s)	419, 489, 767
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	3 cut(s)	394, 535, 753
BspLI	GGNNCC	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	1 cut(s)	788
BspQI	GCTCTTC	1 cut(s)	843
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	3 cut(s)	211, 337, 780
BssNAI	GTATAC	1 cut(s)	627
Bst1107I	GTATAC	1 cut(s)	627
Bst2UI	CCWGG	2 cut(s)	92, 293
Bst6I	CTCTTC	2 cut(s)	588, 843
BstC8I	GCNNGC	2 cut(s)	769, 855
BstDEI	CTNAG	4 cut(s)	381, 522, 761, 902
BstF5I	GGATG	3 cut(s)	37, 375, 677
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	3 cut(s)	214, 340, 783
BstMAI	GTCTC	2 cut(s)	576, 639
BstMBI	GATC	3 cut(s)	211, 337, 780
BstNI	CCWGG	2 cut(s)	92, 293
BstNSI	RCATGY	2 cut(s)	364, 857
BstSCI	CCNGG	2 cut(s)	90, 291
BstSFI	CTRYAG	2 cut(s)	657, 912
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	444, 802
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZ17I	GTATAC	1 cut(s)	627
Bsu36I	CCTNAGG	1 cut(s)	761
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	37, 375, 677
BtsI	GCAGTG	2 cut(s)	276, 909
BtsIMutI	CAGTG	3 cut(s)	255, 276, 909
Cac8I	GCNNGC	2 cut(s)	769, 855
CfoI	GCGC	1 cut(s)	909
Cfr13I	GGNCC	3 cut(s)	59, 60, 230
CviAII	CATG	8 cut(s)	341, 361, 562, 568, 631, 772, 854, 882
CviJI	RGCY	7 cut(s)	61, 69, 139, 166, 488, 572, 820
CviKI_1	RGCY	7 cut(s)	61, 69, 139, 166, 488, 572, 820
DdeI	CTNAG	4 cut(s)	381, 522, 761, 902
DpnI	GATC	3 cut(s)	213, 339, 782
DpnII	GATC	3 cut(s)	211, 337, 780
Eam1104I	CTCTTC	2 cut(s)	588, 843
EarI	CTCTTC	2 cut(s)	588, 843
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	51, 435
Eco81I	CCTNAGG	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	90, 291
EcoT38I	GRGCYC	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	576
FaeI	CATG	8 cut(s)	344, 364, 565, 571, 634, 775, 857, 885
FatI	CATG	8 cut(s)	340, 360, 561, 567, 630, 771, 853, 881
FauI	CCCGC	1 cut(s)	760
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	3 cut(s)	433, 489, 791
FokI	GGATG	3 cut(s)	24, 362, 684
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	3 cut(s)	433, 489, 791
FspBI	CTAG	3 cut(s)	158, 548, 573
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	3 cut(s)	433, 489, 791
HaeIII	GGCC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	8 cut(s)	344, 364, 565, 571, 634, 775, 857, 885
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	3 cut(s)	95, 459, 605
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	2 cut(s)	427, 627
Hpy188I	TCNGA	3 cut(s)	384, 697, 837
Hpy188III	TCNNGA	2 cut(s)	29, 158
Hpy8I	GTNNAC	2 cut(s)	427, 627
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	4 cut(s)	209, 274, 401, 914
HpyF3I	CTNAG	4 cut(s)	381, 522, 761, 902
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	8 cut(s)	344, 364, 565, 571, 634, 775, 857, 885
HspAI	GCGC	1 cut(s)	907
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	211, 337, 780
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	1 cut(s)	518
Lsp1109I	GCAGC	2 cut(s)	444, 802
MaeI	CTAG	3 cut(s)	158, 548, 573
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	884
MalI	GATC	3 cut(s)	213, 339, 782
MboI	GATC	3 cut(s)	211, 337, 780
MboII	GAAGA	5 cut(s)	20, 322, 605, 815, 860
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	6 cut(s)	153, 301, 317, 472, 542, 794
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	8 cut(s)	390, 515, 569, 714, 756, 763, 769, 868
MseI	TTAA	2 cut(s)	612, 867
MslI	CAYNNNNRTG	2 cut(s)	566, 620
MspR9I	CCNGG	2 cut(s)	92, 293
MvaI	CCWGG	2 cut(s)	92, 293
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	3 cut(s)	211, 337, 780
NlaIII	CATG	8 cut(s)	344, 364, 565, 571, 634, 775, 857, 885
NlaIV	GGNNCC	1 cut(s)	61
NspI	RCATGY	2 cut(s)	364, 857
PaeI	GCATGC	1 cut(s)	857
PciSI	GCTCTTC	1 cut(s)	843
PfeI	GAWTC	2 cut(s)	459, 605
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	434, 490, 792
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	90, 291
PspGI	CCWGG	2 cut(s)	90, 291
PspN4I	GGNNCC	1 cut(s)	61
PspOMI	GGGCCC	1 cut(s)	59
PspPI	GGNCC	3 cut(s)	59, 60, 230
PsrI	GAACNNNNNNTAC	4 cut(s)	71, 103, 377, 409
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	566, 620
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	2 cut(s)	612, 867
SatI	GCNGC	3 cut(s)	433, 489, 791
Sau3AI	GATC	3 cut(s)	211, 337, 780
Sau96I	GGNCC	3 cut(s)	59, 60, 230
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	92, 293
SduI	GDGCHC	1 cut(s)	63
SfcI	CTRYAG	2 cut(s)	657, 912
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	566, 620
SphI	GCATGC	1 cut(s)	857
Sse9I	AATT	6 cut(s)	153, 301, 317, 472, 542, 794
SsiI	CCGC	3 cut(s)	419, 489, 767
SspMI	CTAG	3 cut(s)	158, 548, 573
StyD4I	CCNGG	2 cut(s)	90, 291
TaiI	ACGT	1 cut(s)	588
TasI	AATT	6 cut(s)	153, 301, 317, 472, 542, 794
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	2 cut(s)	459, 605
Tru1I	TTAA	2 cut(s)	612, 867
Tru9I	TTAA	2 cut(s)	612, 867
TscAI	CASTG	3 cut(s)	255, 276, 916
TseI	GCWGC	2 cut(s)	432, 790
TspDTI	ATGAA	3 cut(s)	59, 498, 597
TspRI	CASTG	3 cut(s)	255, 276, 916
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	3 cut(s)	301, 317, 472
XbaI	TCTAGA	1 cut(s)	157
XceI	RCATGY	2 cut(s)	364, 857
XmiI	GTMKAC	1 cut(s)	626
XspI	CTAG	3 cut(s)	158, 548, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.