Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

62696400 .. 62707091

Gene Structure 10692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG468500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAATTTCCTACCGCCGCGACTTGGAGTCTGGAGACTTGGACTCTTGGAGCACAGAGGTGCAGAGCAGTCCGACTCAGCGACCCGGCGATCTGCAAAAGTGCAAGGCTGGAAGCCTGGAACCAGCAACCCATCTCCGGTCTCCGAGCTCCCCACCACCACCAGCAACCCGTCTGGGCCGTCTGGCTGTCTCCGTGTTGATGTTGATTACTTGATTTTAATAAAGTTTGTAACTTTCTTGAAAAAAAATAAAGGTTCTTGCATTGCTGAAAGTCAAGACACTGGGTCTTCGGCAACCTCATCAAGATTTGCAGTTGGCCAGTTGTCTACTTCTCTGGCCTCAGGCCTGCAATTTCAATATCATCAACAGGCACATAAGGTTAGAGAGCTTCAGGCTACAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGATTAACTGTTATGGGAAAACAGCCACTAATGACATTAGATTCAATGCCATCAAGGTTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

196

Amino Acids

20.84

Weight (kDa)

9.24

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	326
AccII	CGCG	1 cut(s)	19
AciI	CCGC	3 cut(s)	14, 17, 455
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	374
AfiI	CCNNNNNNNGG	2 cut(s)	23, 136
AgsI	TTSAA	3 cut(s)	241, 356, 571
AhdI	GACNNNNNGTC	2 cut(s)	26, 283
AjnI	CCWGG	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	148, 388
AluI	AGCT	2 cut(s)	148, 388
Alw21I	GWGCWC	2 cut(s)	54, 150
Alw26I	GTCTC	3 cut(s)	28, 145, 194
AoxI	GGCC	4 cut(s)	176, 316, 336, 343
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	432
AxyI	CCTNAGG	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	2 cut(s)	54, 150
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	4 cut(s)	139, 409, 419, 584
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	3 cut(s)	28, 145, 194
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	3 cut(s)	17, 456, 507
BlsI	GCNGC	3 cut(s)	18, 457, 508
Bme1390I	CCNGG	2 cut(s)	85, 117
BmeRI	GACNNNNNGTC	2 cut(s)	26, 283
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	85, 117
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	85
BsaI	GGTCTC	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 136
Bse1I	ACTGG	2 cut(s)	286, 319
Bse21I	CCTNAGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	261, 492
BseBI	CCWGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	23, 136
BseMI	GCAATG	2 cut(s)	261, 492
BseMII	CTCAG	2 cut(s)	90, 354
BseNI	ACTGG	2 cut(s)	286, 319
BseXI	GCAGC	1 cut(s)	518
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	19
BshFI	GGCC	4 cut(s)	178, 318, 338, 345
BsiHKAI	GWGCWC	2 cut(s)	54, 150
BsiSI	CCGG	2 cut(s)	85, 137
BslI	CCNNNNNNNGG	2 cut(s)	23, 136
BsmAI	GTCTC	3 cut(s)	28, 145, 194
BsnI	GGCC	4 cut(s)	178, 318, 338, 345
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	54, 150
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	3 cut(s)	14, 17, 455
BspANI	GGCC	4 cut(s)	178, 318, 338, 345
BspCNI	CTCAG	2 cut(s)	89, 353
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	261, 492
BsrI	ACTGG	2 cut(s)	286, 319
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	409, 536
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	347, 484
BstDEI	CTNAG	2 cut(s)	76, 340
BstFNI	CGCG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	3 cut(s)	28, 145, 194
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 479, 503
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	83, 115
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	518
BstV2I	GAAGAC	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	340
BsuRI	GGCC	4 cut(s)	178, 318, 338, 345
BtgZI	GCGATG	1 cut(s)	428
BtsIMutI	CAGTG	2 cut(s)	279, 405
Cac8I	GCNNGC	2 cut(s)	347, 484
Cfr13I	GGNCC	1 cut(s)	176
DdeI	CTNAG	2 cut(s)	76, 340
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
DriI	GACNNNNNGTC	2 cut(s)	26, 283
EaeI	YGGCCR	1 cut(s)	316
Eam1105I	GACNNNNNGTC	2 cut(s)	26, 283
Ecl136II	GAGCTC	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	374
Eco81I	CCTNAGG	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	150
FaiI	YATR	2 cut(s)	375, 540
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	17, 456, 507
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	17, 456, 507
GluI	GCNGC	3 cut(s)	17, 456, 507
GsuI	CTGGAG	1 cut(s)	52
HaeIII	GGCC	4 cut(s)	178, 318, 338, 345
HapII	CCGG	2 cut(s)	85, 137
HinfI	GANTC	5 cut(s)	27, 42, 74, 437, 567
HpaII	CCGG	2 cut(s)	85, 137
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	73, 145
Hpy188III	TCNNGA	4 cut(s)	31, 238, 275, 303
Hpy8I	GTNNAC	1 cut(s)	327
HpyCH4III	ACNGT	2 cut(s)	409, 536
HpyCH4V	TGCA	7 cut(s)	62, 95, 103, 261, 311, 349, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 479, 503
HpyF3I	CTNAG	2 cut(s)	76, 340
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	49, 153
Lsp1109I	GCAGC	1 cut(s)	518
LweI	GCATC	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	279, 538
MfeI	CAATTG	2 cut(s)	474, 498
MhlI	GDGCHC	2 cut(s)	54, 150
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	4 cut(s)	4, 350, 474, 498
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	4 cut(s)	36, 36, 68, 431
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	50, 307, 349, 496
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	2 cut(s)	218, 531
MslI	CAYNNNNRTG	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	318
MspI	CCGG	2 cut(s)	85, 137
MspR9I	CCNGG	2 cut(s)	85, 117
MunI	CAATTG	2 cut(s)	474, 498
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	3 cut(s)	452, 479, 503
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	121
OliI	CACNNNNGTG	1 cut(s)	57
PceI	AGGCCT	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	567
PkrI	GCNGC	3 cut(s)	18, 457, 508
PleI	GAGTC	4 cut(s)	35, 36, 68, 431
PpsI	GAGTC	4 cut(s)	35, 36, 68, 431
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	218, 531
SatI	GCNGC	3 cut(s)	17, 456, 507
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	4 cut(s)	36, 36, 68, 431
ScrFI	CCNGG	2 cut(s)	85, 117
SduI	GDGCHC	2 cut(s)	54, 150
SetI	ASST	7 cut(s)	61, 150, 256, 299, 381, 390, 585
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	4 cut(s)	4, 350, 474, 498
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	3 cut(s)	14, 17, 455
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	83, 115
TaaI	ACNGT	2 cut(s)	409, 536
TasI	AATT	4 cut(s)	4, 350, 474, 498
TauI	GCSGC	2 cut(s)	19, 458
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	2 cut(s)	218, 531
Tru9I	TTAA	2 cut(s)	218, 531
TscAI	CASTG	2 cut(s)	286, 412
TseI	GCWGC	1 cut(s)	506
TspDTI	ATGAA	2 cut(s)	17, 539
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	286, 412
XapI	RAATTY	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.