Rh7BG434400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001344
Physical Location & Seq
Forward (+)
49817716 .. 49818129
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG434400.1

Sequence Viewer

Length: 234 bp
ATGGATGAGCTTGTTGGTATGAATTTCCTACCGCCGCGACTTGGAGTCTGGAGACTTGGACTCTTGGAGCACAGAGGCGCAGAGCAGTCCGACTCAGCGACCCGGCGATCTGCAAAAGTGCAAGGCTGGAAGCCTGGAACCAGCAACCCATCTCCGGTAGTCCGGTCTCCGAGCTCCCCACCGCCACCAGCAACCCGTCTGGGCCGTCTGGCTGTCTCCGTGTTTTATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.35

Weight (kDa)

11.23

Isoelectric Point (pI)

76.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 37
AciI CCGC 3 cut(s) 32, 35, 182
AcsI RAATTY 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 41, 154
AhdI GACNNNNNGTC 1 cut(s) 44
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 2 cut(s) 10, 174
AluI AGCT 2 cut(s) 10, 174
Alw21I GWGCWC 2 cut(s) 72, 176
Alw26I GTCTC 3 cut(s) 46, 171, 220
AoxI GGCC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 22
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 103
BanII GRGCYC 1 cut(s) 176
Bbv12I GWGCWC 2 cut(s) 72, 176
BccI CCATC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 135
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 3 cut(s) 46, 171, 220
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 2 cut(s) 103, 135
BmeRI GACNNNNNGTC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 2 cut(s) 103, 135
BpmI CTGGAG 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 171
BsaWI WCCGGW 2 cut(s) 154, 162
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 154
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 41, 154
BseMII CTCAG 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 204
BsiHKAI GWGCWC 2 cut(s) 72, 176
BsiSI CCGG 3 cut(s) 103, 155, 163
BslI CCNNNNNNNGG 2 cut(s) 41, 154
BsmAI GTCTC 3 cut(s) 46, 171, 220
BsnI GGCC 1 cut(s) 204
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 72, 176
Bsp143I GATC 1 cut(s) 107
BspACI CCGC 3 cut(s) 32, 35, 182
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 107
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 171
BssMI GATC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 3 cut(s) 46, 171, 220
BstMBI GATC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 2 cut(s) 101, 133
BstUI CGCG 1 cut(s) 37
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 10
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 202
CviJI RGCY 6 cut(s) 10, 126, 133, 174, 204, 212
CviKI_1 RGCY 6 cut(s) 10, 126, 133, 174, 204, 212
DdeI CTNAG 1 cut(s) 94
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
DriI GACNNNNNGTC 1 cut(s) 44
Eam1105I GACNNNNNGTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 176
FaiI YATR 2 cut(s) 20, 228
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 35
GlaI GCGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 1 cut(s) 204
HapII CCGG 3 cut(s) 103, 155, 163
HhaI GCGC 1 cut(s) 80
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 3 cut(s) 45, 60, 92
HpaII CCGG 3 cut(s) 103, 155, 163
Hpy188I TCNGA 2 cut(s) 91, 171
Hpy188III TCNNGA 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 113, 121
HpyF3I CTNAG 1 cut(s) 94
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 2 cut(s) 67, 179
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MhlI GDGCHC 2 cut(s) 72, 176
MluCI AATT 1 cut(s) 22
MlyI GAGTC 3 cut(s) 54, 54, 86
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 1 cut(s) 68
MspI CCGG 3 cut(s) 103, 155, 163
MspR9I CCNGG 2 cut(s) 103, 135
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 1 cut(s) 37
NciI CCSGG 1 cut(s) 103
NdeII GATC 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 3 cut(s) 53, 54, 86
PpsI GAGTC 3 cut(s) 53, 54, 86
Psp124BI GAGCTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 202
SacI GAGCTC 1 cut(s) 176
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 3 cut(s) 54, 54, 86
ScrFI CCNGG 2 cut(s) 103, 135
SduI GDGCHC 2 cut(s) 72, 176
SetI ASST 2 cut(s) 12, 176
Sse9I AATT 1 cut(s) 22
SsiI CCGC 3 cut(s) 32, 35, 182
SstI GAGCTC 1 cut(s) 176
StyD4I CCNGG 2 cut(s) 101, 133
TasI AATT 1 cut(s) 22
TauI GCSGC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 208
XapI RAATTY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.