Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

5797393 .. 5798869

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGATCAGCAAACACAGGTATGGAGGTGGCGAGGTCATCGGAATGTTTCCAAAGGGAGGACCTGGCCGTCGTCCCCAAGCCTGATGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTACAATTGGGAAGCCACTGGTTGTTAACCCACGACTCATGAAAAATATAGTGCTTCGGGAATTCTATGAACTTGTTGATGCAGCTGAGGGCAAGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTGCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATTCTCAAGTCAATGAATTTTAGAAGCATAATGGTGACAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGTTGGCACTAACATTGCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

182

Amino Acids

19.22

Weight (kDa)

4.51

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AciI	CCGC	1 cut(s)	500
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	182, 421
AcuI	CTGAAG	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	58, 89
AjnI	CCWGG	2 cut(s)	63, 382
AluBI	AGCT	3 cut(s)	206, 240, 299
AluI	AGCT	3 cut(s)	206, 240, 299
Alw21I	GWGCWC	1 cut(s)	391
AlwI	GGATC	1 cut(s)	365
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	2 cut(s)	182, 421
AspS9I	GGNCC	2 cut(s)	61, 250
AsuHPI	GGTGA	2 cut(s)	451, 477
AvaII	GGWCC	2 cut(s)	61, 250
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	391
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	5 cut(s)	80, 238, 332, 454, 464
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	2 cut(s)	65, 384
BfaI	CTAG	3 cut(s)	290, 326, 359
BisI	GCNGC	2 cut(s)	204, 501
BlsI	GCNGC	2 cut(s)	205, 502
Bme1390I	CCNGG	2 cut(s)	65, 384
Bme18I	GGWCC	2 cut(s)	61, 250
BmgT120I	GGNCC	2 cut(s)	61, 250
BmrFI	CCNGG	2 cut(s)	65, 384
BmrI	ACTGGG	1 cut(s)	327
BmsI	GCATC	3 cut(s)	190, 265, 483
BmuI	ACTGGG	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	375, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 89
Bse1I	ACTGG	2 cut(s)	144, 322
Bse3DI	GCAATG	3 cut(s)	258, 537, 549
BseBI	CCWGG	2 cut(s)	65, 384
BseLI	CCNNNNNNNGG	2 cut(s)	58, 89
BseMI	GCAATG	3 cut(s)	258, 537, 549
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	144, 322
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	391
BslFI	GGGAC	2 cut(s)	59, 131
BslI	CCNNNNNNNGG	2 cut(s)	58, 89
BsmFI	GGGAC	2 cut(s)	59, 131
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	5, 370
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	159
BspPI	GGATC	1 cut(s)	365
BsrDI	GCAATG	3 cut(s)	258, 537, 549
BsrI	ACTGG	2 cut(s)	144, 322
BssMI	GATC	2 cut(s)	5, 370
Bst2UI	CCWGG	2 cut(s)	65, 384
Bst4CI	ACNGT	1 cut(s)	454
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	8, 373
BstMBI	GATC	2 cut(s)	5, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 497
BstNI	CCWGG	2 cut(s)	65, 384
BstSCI	CCNGG	2 cut(s)	63, 382
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	473
BtsIMutI	CAGTG	3 cut(s)	137, 374, 450
Cac8I	GCNNGC	1 cut(s)	309
CaiI	CAGNNNCTG	1 cut(s)	299
CciI	TCATGA	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	61, 250
CsiI	ACCWGGT	1 cut(s)	382
CviAII	CATG	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	7, 372
DpnII	GATC	2 cut(s)	5, 370
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	66
Eco47I	GGWCC	2 cut(s)	61, 250
Eco57I	CTGAAG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	63, 382
FaeI	CATG	1 cut(s)	163
FaiI	YATR	6 cut(s)	23, 161, 170, 189, 335, 434
FaqI	GGGAC	2 cut(s)	59, 131
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	204, 501
Fsp4HI	GCNGC	2 cut(s)	204, 501
FspBI	CTAG	3 cut(s)	290, 326, 359
GluI	GCNGC	2 cut(s)	204, 501
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	163
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	4 cut(s)	119, 156, 322, 482
HpaI	GTTAAC	1 cut(s)	148
HphI	GGTGA	2 cut(s)	451, 477
Hpy166II	GTNNAC	3 cut(s)	92, 148, 250
Hpy188I	TCNGA	2 cut(s)	43, 370
Hpy188III	TCNNGA	3 cut(s)	160, 179, 392
Hpy8I	GTNNAC	3 cut(s)	92, 148, 250
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	6 cut(s)	97, 203, 263, 269, 278, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 497
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	163
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	5, 370
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	3 cut(s)	190, 265, 483
MabI	ACCWGGT	1 cut(s)	382
MaeI	CTAG	3 cut(s)	290, 326, 359
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	7, 372
MboI	GATC	2 cut(s)	5, 370
MboII	GAAGA	1 cut(s)	293
MfeI	CAATTG	2 cut(s)	126, 519
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	6 cut(s)	126, 182, 222, 399, 421, 519
MlyI	GAGTC	3 cut(s)	113, 150, 476
MnlI	CCTC	4 cut(s)	19, 27, 52, 202
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	4 cut(s)	20, 43, 437, 542
MspA1I	CMGCKG	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	65, 384
MunI	CAATTG	2 cut(s)	126, 519
MvaI	CCWGG	2 cut(s)	65, 384
MwoI	GCNNNNNNNGC	2 cut(s)	275, 497
NdeII	GATC	2 cut(s)	5, 370
NlaIII	CATG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	439
PagI	TCATGA	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	205, 502
PleI	GAGTC	3 cut(s)	113, 150, 476
PpsI	GAGTC	3 cut(s)	113, 150, 476
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	63, 382
PspGI	CCWGG	2 cut(s)	63, 382
PspPI	GGNCC	2 cut(s)	61, 250
PspPPI	RGGWCCY	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	206
RseI	CAYNNNNRTG	4 cut(s)	20, 43, 437, 542
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	204, 501
Sau3AI	GATC	2 cut(s)	5, 370
Sau96I	GGNCC	2 cut(s)	61, 250
SchI	GAGTC	3 cut(s)	113, 150, 476
ScrFI	CCNGG	2 cut(s)	65, 384
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	9 cut(s)	22, 30, 38, 66, 208, 242, 291, 301, 388
SexAI	ACCWGGT	1 cut(s)	382
SfaNI	GCATC	3 cut(s)	190, 265, 483
SinI	GGWCC	2 cut(s)	61, 250
SmiMI	CAYNNNNRTG	4 cut(s)	20, 43, 437, 542
SmlI	CTYRAG	2 cut(s)	390, 410
SmoI	CTYRAG	2 cut(s)	390, 410
Sse9I	AATT	6 cut(s)	126, 182, 222, 399, 421, 519
SsiI	CCGC	1 cut(s)	500
SspMI	CTAG	3 cut(s)	290, 326, 359
StyD4I	CCNGG	2 cut(s)	63, 382
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	106, 273
TasI	AATT	6 cut(s)	126, 182, 222, 399, 421, 519
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	144, 381, 457
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	176, 204, 434
TspRI	CASTG	3 cut(s)	144, 381, 457
VpaK11BI	GGWCC	2 cut(s)	61, 250
XapI	RAATTY	2 cut(s)	182, 421
XspI	CTAG	3 cut(s)	290, 326, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.