Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

49818153 .. 49819759

Gene Structure 1607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG434500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCCAATGGTTTCGATTTCGGTTGGTGCTACTGTCCTACTGATGTTGATGGTTCTTGCATTGCTGAAAGTCAAGACACTGGGTCTTTGGCAACCTCATCAAGATTTGCAGTTGGCCAGTTGTCTACTTATCTGGCCTCAGGCCTGCAATTTCAATATCATCAACAGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTTACAATTGGGAAGCCACTGGTTGTTAACACACGACTCATGAAAAATATAATGCTTCGAGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGACCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTACTGGTCACGGGGTGAAGGCTATTGTTCAGGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCAATGCAGAAGACTACCTAGCAGAAGCTGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

175

Amino Acids

19.08

Weight (kDa)

4.68

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	57 - 146	7.2e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	125
AcoI	YGGCCR	3 cut(s)	3, 115, 312
AcsI	RAATTY	2 cut(s)	263, 341
AdeI	CACNNNGTG	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	155
AhdI	GACNNNNNGTC	1 cut(s)	82
AluBI	AGCT	3 cut(s)	287, 459, 518
AluI	AGCT	3 cut(s)	287, 459, 518
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	6 cut(s)	3, 115, 135, 142, 312, 371
ApeKI	GCWGC	2 cut(s)	281, 284
ApoI	RAATTY	2 cut(s)	263, 341
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	371, 469
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	139
BalI	TGGCCA	3 cut(s)	5, 117, 314
BbsI	GAAGAC	1 cut(s)	507
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	268, 296
BccI	CCATC	2 cut(s)	44, 457
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BcnI	CCSGG	1 cut(s)	370
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	282, 285
BlsI	GCNGC	2 cut(s)	283, 286
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	469
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	371, 469
BmrFI	CCNGG	1 cut(s)	370
BmrI	ACTGGG	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bse1I	ACTGG	4 cut(s)	85, 118, 225, 406
Bse21I	CCTNAGG	1 cut(s)	139
Bse3DI	GCAATG	2 cut(s)	60, 477
BseDI	CCNNGG	1 cut(s)	309
BseMI	GCAATG	2 cut(s)	60, 477
BseMII	CTCAG	2 cut(s)	153, 279
BseNI	ACTGG	4 cut(s)	85, 118, 225, 406
BseXI	GCAGC	2 cut(s)	268, 296
BshFI	GGCC	6 cut(s)	5, 117, 137, 144, 314, 373
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	6 cut(s)	5, 117, 137, 144, 314, 373
BspANI	GGCC	6 cut(s)	5, 117, 137, 144, 314, 373
BspCNI	CTCAG	2 cut(s)	152, 280
BspHI	TCATGA	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	286
BsrDI	GCAATG	2 cut(s)	60, 477
BsrI	ACTGG	4 cut(s)	85, 118, 225, 406
BssECI	CCNNGG	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	35, 299
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	139, 288
BstHHI	GCGC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	268, 296
BstV2I	GAAGAC	1 cut(s)	507
Bsu36I	CCTNAGG	1 cut(s)	139
BsuRI	GGCC	6 cut(s)	5, 117, 137, 144, 314, 373
BtsIMutI	CAGTG	3 cut(s)	78, 218, 304
Cac8I	GCNNGC	1 cut(s)	146
CaiI	CAGNNNCTG	1 cut(s)	518
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	371, 469
CviAII	CATG	2 cut(s)	241, 383
DdeI	CTNAG	2 cut(s)	139, 288
DraIII	CACNNNGTG	1 cut(s)	412
DriI	GACNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	3 cut(s)	3, 115, 312
Eam1104I	CTCTTC	1 cut(s)	351
Eam1105I	GACNNNNNGTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	469
Eco81I	CCTNAGG	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	244, 386
FaiI	YATR	5 cut(s)	242, 251, 270, 333, 384
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	2 cut(s)	240, 382
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	2 cut(s)	282, 285
Fsp4HI	GCNGC	2 cut(s)	282, 285
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	2 cut(s)	282, 285
HaeIII	GGCC	6 cut(s)	5, 117, 137, 144, 314, 373
HapII	CCGG	1 cut(s)	369
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	244, 386
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	2 cut(s)	229, 295
HindII	GTYRAC	2 cut(s)	229, 295
HinfI	GANTC	3 cut(s)	199, 237, 361
HpaI	GTTAAC	2 cut(s)	229, 295
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	6 cut(s)	126, 172, 229, 295, 302, 469
Hpy188I	TCNGA	1 cut(s)	347
Hpy188III	TCNNGA	4 cut(s)	74, 102, 241, 260
Hpy8I	GTNNAC	6 cut(s)	126, 172, 229, 295, 302, 469
HpyAV	CCTTC	2 cut(s)	409, 515
HpyCH4III	ACNGT	2 cut(s)	35, 299
HpyCH4V	TGCA	7 cut(s)	60, 110, 148, 177, 284, 482, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	2 cut(s)	139, 288
Hsp92II	CATG	2 cut(s)	244, 386
HspAI	GCGC	1 cut(s)	380
KspAI	GTTAAC	2 cut(s)	229, 295
Lsp1109I	GCAGC	2 cut(s)	268, 296
MaeI	CTAG	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	404
MboII	GAAGA	3 cut(s)	362, 368, 512
MfeI	CAATTG	1 cut(s)	207
MlsI	TGGCCA	3 cut(s)	5, 117, 314
MluCI	AATT	5 cut(s)	149, 207, 263, 341, 441
MluNI	TGGCCA	3 cut(s)	5, 117, 314
MlyI	GAGTC	2 cut(s)	193, 231
MnlI	CCTC	4 cut(s)	106, 148, 283, 403
Mox20I	TGGCCA	3 cut(s)	5, 117, 314
MscI	TGGCCA	3 cut(s)	5, 117, 314
MseI	TTAA	2 cut(s)	228, 294
Msp20I	TGGCCA	3 cut(s)	5, 117, 314
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	370
MunI	CAATTG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	379
NciI	CCSGG	1 cut(s)	370
NlaIII	CATG	2 cut(s)	244, 386
NmuCI	GTSAC	1 cut(s)	404
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	283, 286
PleI	GAGTC	2 cut(s)	193, 231
PpsI	GAGTC	2 cut(s)	193, 231
PspPI	GGNCC	2 cut(s)	371, 469
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	228, 294
SatI	GCNGC	2 cut(s)	282, 285
Sau96I	GGNCC	2 cut(s)	371, 469
SchI	GAGTC	2 cut(s)	193, 231
ScrFI	CCNGG	1 cut(s)	370
SetI	ASST	7 cut(s)	98, 171, 289, 294, 461, 510, 520
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	469
Sse9I	AATT	5 cut(s)	149, 207, 263, 341, 441
SseBI	AGGCCT	1 cut(s)	144
SspMI	CTAG	1 cut(s)	509
StuI	AGGCCT	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	35, 299
TaqI	TCGA	3 cut(s)	15, 186, 259
TasI	AATT	5 cut(s)	149, 207, 263, 341, 441
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	2 cut(s)	228, 294
Tru9I	TTAA	2 cut(s)	228, 294
TscAI	CASTG	3 cut(s)	85, 225, 304
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	281, 284
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	257, 285, 369
TspRI	CASTG	3 cut(s)	85, 225, 304
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	263, 341
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.