Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

47476862 .. 47477830

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G030130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACTGGAATGGATAACATTACATCTGAAATAGTAGTGCAATCTTTCTCAATCTTCCGTAACAATGAATCCTCAGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTACTGGTCACGGGGTGAAGGCTATTGTTCAGGGTAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTGACAATTGGGGAACTGCAAATTCTATTGCCAATGAAGTACGTTGGTATTGATATTGTTATAGCCGAAGCGAAACTTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCACTGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

215

Amino Acids

22.74

Weight (kDa)

4.39

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	548
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	98, 393
AcuI	CTGAAG	2 cut(s)	297, 474
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	1 cut(s)	413
AjnI	CCWGG	1 cut(s)	358
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AluBI	AGCT	2 cut(s)	216, 275
AluI	AGCT	2 cut(s)	216, 275
Alw21I	GWGCWC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	2 cut(s)	98, 393
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	128, 226
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	3 cut(s)	181, 446, 525
AvaII	GGWCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	611
BccI	CCATC	4 cut(s)	214, 308, 502, 512
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	127
BfaI	CTAG	3 cut(s)	266, 302, 335
BisI	GCNGC	2 cut(s)	549, 600
BlsI	GCNGC	2 cut(s)	550, 601
Bme1390I	CCNGG	2 cut(s)	127, 360
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	128, 226
BmrFI	CCNGG	2 cut(s)	127, 360
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	241, 531
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bse1I	ACTGG	3 cut(s)	10, 163, 298
Bse3DI	GCAATG	2 cut(s)	234, 585
BseBI	CCWGG	1 cut(s)	360
BseMI	GCAATG	2 cut(s)	234, 585
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	3 cut(s)	10, 163, 298
BseXI	GCAGC	1 cut(s)	611
BshFI	GGCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	126
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	346, 451
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	86
BspPI	GGATC	1 cut(s)	341
BsrDI	GCAATG	2 cut(s)	234, 585
BsrI	ACTGG	3 cut(s)	10, 163, 298
BssMI	GATC	2 cut(s)	346, 451
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	2 cut(s)	108, 614
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	3 cut(s)	285, 486, 577
BstDEI	CTNAG	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	2 cut(s)	349, 454
BstMBI	GATC	2 cut(s)	346, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 545, 572, 596
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	125, 358
BstV1I	GCAGC	1 cut(s)	611
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	130
BtgZI	GCGATG	1 cut(s)	521
BtsIMutI	CAGTG	3 cut(s)	350, 498, 525
Cac8I	GCNNGC	3 cut(s)	285, 486, 577
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	128, 226
CsiI	ACCWGGT	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	140
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	2 cut(s)	348, 453
DpnII	GATC	2 cut(s)	346, 451
DraIII	CACNNNGTG	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	108, 614
EarI	CTCTTC	2 cut(s)	108, 614
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	297, 474
EcoRII	CCWGG	1 cut(s)	358
FaeI	CATG	1 cut(s)	143
FaiI	YATR	4 cut(s)	90, 141, 311, 434
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FatI	CATG	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	549, 600
Fsp4HI	GCNGC	2 cut(s)	549, 600
FspBI	CTAG	3 cut(s)	266, 302, 335
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	549, 600
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	143
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	4 cut(s)	68, 118, 298, 530
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	3 cut(s)	181, 446, 525
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	28, 104, 346
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	166, 272, 469
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	6 cut(s)	40, 239, 254, 391, 484, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 545, 572, 596
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	1 cut(s)	143
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	346, 451
Lsp1109I	GCAGC	1 cut(s)	611
LweI	GCATC	2 cut(s)	241, 531
MabI	ACCWGGT	1 cut(s)	358
MaeI	CTAG	3 cut(s)	266, 302, 335
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	3 cut(s)	59, 161, 373
MalI	GATC	2 cut(s)	348, 453
MboI	GATC	2 cut(s)	346, 451
MboII	GAAGA	5 cut(s)	46, 119, 125, 269, 631
MfeI	CAATTG	3 cut(s)	378, 567, 591
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	7 cut(s)	98, 198, 378, 393, 479, 567, 591
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	4 cut(s)	82, 160, 589, 642
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	127, 360
MunI	CAATTG	3 cut(s)	378, 567, 591
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	136, 545, 572, 596
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	2 cut(s)	346, 451
NlaIII	CATG	1 cut(s)	143
NmuCI	GTSAC	2 cut(s)	161, 373
PfeI	GAWTC	3 cut(s)	68, 118, 298
PkrI	GCNGC	2 cut(s)	550, 601
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	128, 226
PstNI	CAGNNNCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SatI	GCNGC	2 cut(s)	549, 600
Sau3AI	GATC	2 cut(s)	346, 451
Sau96I	GGNCC	2 cut(s)	128, 226
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	127, 360
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	6 cut(s)	218, 267, 277, 364, 417, 629
SexAI	ACCWGGT	1 cut(s)	358
SfaNI	GCATC	2 cut(s)	241, 531
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	7 cut(s)	98, 198, 378, 393, 479, 567, 591
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	3 cut(s)	266, 302, 335
StyD4I	CCNGG	2 cut(s)	125, 358
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	1 cut(s)	249
TasI	AATT	7 cut(s)	98, 198, 378, 393, 479, 567, 591
TauI	GCSGC	1 cut(s)	551
TfiI	GAWTC	3 cut(s)	68, 118, 298
TscAI	CASTG	3 cut(s)	357, 505, 532
TseFI	GTSAC	2 cut(s)	161, 373
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	2 cut(s)	161, 373
TspDTI	ATGAA	4 cut(s)	81, 126, 422, 632
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	3 cut(s)	357, 505, 532
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	2 cut(s)	98, 393
XspI	CTAG	3 cut(s)	266, 302, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.