Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

67874204 .. 67875242

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGGTGGCGAGGTCATCGGAATGTTTCCAAAGGGAGGACCTGGCCGTCGTCCCCAAGCCTGATGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTACAATTGGGAAGCCACTGGTTGTTAACCCACGACTCATGAAAAATATAGTGCTTCGGGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTAATGGTCACGGGGTGAAGGCTATTGTTCAGGGCAAGGAAATAATTATGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCCGAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

144

Amino Acids

15.96

Weight (kDa)

5.82

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AcoI	YGGCCR	2 cut(s)	45, 210
AcsI	RAATTY	2 cut(s)	161, 239
AcuI	CTGAAG	1 cut(s)	428
AdeI	CACNNNGTG	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	37, 68
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	3 cut(s)	185, 357, 406
AluI	AGCT	3 cut(s)	185, 357, 406
AlwNI	CAGNNNCTG	1 cut(s)	406
AoxI	GGCC	4 cut(s)	45, 210, 216, 269
ApeKI	GCWGC	2 cut(s)	179, 182
ApoI	RAATTY	2 cut(s)	161, 239
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	3 cut(s)	40, 269, 367
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	40, 367
BalI	TGGCCA	1 cut(s)	212
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	166, 194
BccI	CCATC	2 cut(s)	59, 355
BceAI	ACGGC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	44
BcnI	CCSGG	1 cut(s)	268
BfaI	CTAG	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	180, 183
BlsI	GCNGC	2 cut(s)	181, 184
Bme1390I	CCNGG	2 cut(s)	44, 268
Bme18I	GGWCC	2 cut(s)	40, 367
BmgT120I	GGNCC	3 cut(s)	40, 269, 367
BmrFI	CCNGG	2 cut(s)	44, 268
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	207, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 68
Bse1I	ACTGG	2 cut(s)	123, 429
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	207, 213
BseLI	CCNNNNNNNGG	2 cut(s)	37, 68
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	123, 429
BseXI	GCAGC	2 cut(s)	166, 194
BshFI	GGCC	4 cut(s)	47, 212, 218, 271
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	38, 110
BslI	CCNNNNNNNGG	2 cut(s)	37, 68
BsmFI	GGGAC	2 cut(s)	38, 110
BsnI	GGCC	4 cut(s)	47, 212, 218, 271
BspANI	GGCC	4 cut(s)	47, 212, 218, 271
BspCNI	CTCAG	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	123, 429
BssECI	CCNNGG	2 cut(s)	207, 213
BssT1I	CCWWGG	2 cut(s)	207, 213
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	2 cut(s)	42, 266
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	166, 194
BsuRI	GGCC	4 cut(s)	47, 212, 218, 271
BtsIMutI	CAGTG	2 cut(s)	116, 202
Cac8I	GCNNGC	1 cut(s)	416
CaiI	CAGNNNCTG	1 cut(s)	406
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	40, 269, 367
CviAII	CATG	2 cut(s)	139, 281
DdeI	CTNAG	1 cut(s)	186
DraIII	CACNNNGTG	1 cut(s)	310
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	2 cut(s)	45, 210
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	207, 213
Eco47I	GGWCC	2 cut(s)	40, 367
Eco57I	CTGAAG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	2 cut(s)	207, 213
ErhI	CCWWGG	2 cut(s)	207, 213
FaeI	CATG	2 cut(s)	142, 284
FaiI	YATR	6 cut(s)	140, 149, 168, 231, 282, 344
FaqI	GGGAC	2 cut(s)	38, 110
FatI	CATG	2 cut(s)	138, 280
Fnu4HI	GCNGC	2 cut(s)	180, 183
Fsp4HI	GCNGC	2 cut(s)	180, 183
FspBI	CTAG	1 cut(s)	433
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	180, 183
HaeIII	GGCC	4 cut(s)	47, 212, 218, 271
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	142, 284
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HincII	GTYRAC	2 cut(s)	127, 193
HindII	GTYRAC	2 cut(s)	127, 193
HinfI	GANTC	4 cut(s)	98, 135, 259, 429
HpaI	GTTAAC	2 cut(s)	127, 193
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	5 cut(s)	71, 127, 193, 200, 367
Hpy188I	TCNGA	2 cut(s)	22, 245
Hpy188III	TCNNGA	2 cut(s)	139, 158
Hpy8I	GTNNAC	5 cut(s)	71, 127, 193, 200, 367
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	307, 403
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	76, 182, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	142, 284
HspAI	GCGC	1 cut(s)	278
KspAI	GTTAAC	2 cut(s)	127, 193
Lsp1109I	GCAGC	2 cut(s)	166, 194
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	302
MboII	GAAGA	2 cut(s)	260, 266
MfeI	CAATTG	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	4 cut(s)	105, 161, 239, 339
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	92, 129
MnlI	CCTC	4 cut(s)	6, 31, 181, 301
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	3 cut(s)	126, 192, 297
MslI	CAYNNNNRTG	1 cut(s)	22
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	44, 268
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	268
NlaIII	CATG	2 cut(s)	142, 284
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	302
PagI	TCATGA	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	259, 429
PkrI	GCNGC	2 cut(s)	181, 184
PleI	GAGTC	2 cut(s)	92, 129
PpsI	GAGTC	2 cut(s)	92, 129
PpuMI	RGGWCCY	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspPI	GGNCC	3 cut(s)	40, 269, 367
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	3 cut(s)	126, 192, 297
SatI	GCNGC	2 cut(s)	180, 183
Sau96I	GGNCC	3 cut(s)	40, 269, 367
SchI	GAGTC	2 cut(s)	92, 129
ScrFI	CCNGG	2 cut(s)	44, 268
SetI	ASST	7 cut(s)	9, 17, 45, 187, 192, 359, 408
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	2 cut(s)	40, 367
SmiMI	CAYNNNNRTG	1 cut(s)	22
Sse9I	AATT	4 cut(s)	105, 161, 239, 339
SspMI	CTAG	1 cut(s)	433
StyD4I	CCNGG	2 cut(s)	42, 266
StyI	CCWWGG	2 cut(s)	207, 213
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	2 cut(s)	85, 390
TasI	AATT	4 cut(s)	105, 161, 239, 339
TfiI	GAWTC	2 cut(s)	259, 429
Tru1I	TTAA	3 cut(s)	126, 192, 297
Tru9I	TTAA	3 cut(s)	126, 192, 297
TscAI	CASTG	2 cut(s)	123, 202
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	179, 182
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	155, 183, 267
TspRI	CASTG	2 cut(s)	123, 202
VpaK11BI	GGWCC	2 cut(s)	40, 367
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	2 cut(s)	161, 239
XspI	CTAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.