Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

30623792 .. 30626484

Gene Structure 2693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGAGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAACGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAACTGCAAATTCTATTGCCAATGAAGTTGGTATTGATATTGTTATAGCCGAAGCGAAACTTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

157

Amino Acids

16.38

Weight (kDa)

4.14

Isoelectric Point (pI)

24.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	14 - 127	2.2e-19	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	2 cut(s)	78, 300
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	374, 425
ApoI	RAATTY	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	4 cut(s)	208, 215, 272, 351
AvaII	GGWCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	386, 437
BccI	CCATC	3 cut(s)	89, 328, 338
BciT130I	CCWGG	1 cut(s)	141
BclI	TGATCA	1 cut(s)	277
BfaI	CTAG	3 cut(s)	47, 83, 116
BisI	GCNGC	2 cut(s)	375, 426
BlsI	GCNGC	2 cut(s)	376, 427
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	22, 357
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	129
BpuEI	CTTGAG	2 cut(s)	132, 152
Bse3DI	GCAATG	2 cut(s)	15, 411
BseBI	CCWGG	1 cut(s)	141
BseMI	GCAATG	2 cut(s)	15, 411
BseMII	CTCAG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	386, 437
BsiHKAI	GWGCWC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	127, 277
BspCNI	CTCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	15, 411
BssMI	GATC	2 cut(s)	127, 277
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	66, 312, 403
BstDEI	CTNAG	1 cut(s)	75
BstKTI	GATC	2 cut(s)	130, 280
BstMBI	GATC	2 cut(s)	127, 277
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 398, 422
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	386, 437
BstV2I	GAAGAC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	131, 324
Cac8I	GCNNGC	3 cut(s)	66, 312, 403
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	7
CsiI	ACCWGGT	1 cut(s)	139
CviJI	RGCY	8 cut(s)	56, 64, 68, 89, 107, 263, 314, 321
CviKI_1	RGCY	8 cut(s)	56, 64, 68, 89, 107, 263, 314, 321
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	2 cut(s)	129, 279
DpnII	GATC	2 cut(s)	127, 277
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	78, 300
EcoRII	CCWGG	1 cut(s)	139
FaiI	YATR	4 cut(s)	92, 164, 191, 260
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	375, 426
Fsp4HI	GCNGC	2 cut(s)	375, 426
FspBI	CTAG	3 cut(s)	47, 83, 116
GluI	GCNGC	2 cut(s)	375, 426
GsuI	CTGGAG	1 cut(s)	129
HinfI	GANTC	2 cut(s)	79, 356
HphI	GGTGA	4 cut(s)	208, 215, 272, 351
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	2 cut(s)	53, 295
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	20, 35, 221, 310, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 398, 422
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	180
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	127, 277
Lsp1109I	GCAGC	2 cut(s)	386, 437
LweI	GCATC	2 cut(s)	22, 357
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	3 cut(s)	47, 83, 116
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	196, 203
MalI	GATC	2 cut(s)	129, 279
MboI	GATC	2 cut(s)	127, 277
MboII	GAAGA	2 cut(s)	50, 457
MfeI	CAATTG	3 cut(s)	208, 393, 417
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	6 cut(s)	156, 208, 223, 305, 393, 417
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	2 cut(s)	415, 468
MslI	CAYNNNNRTG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	3 cut(s)	208, 393, 417
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	371, 398, 422
NdeII	GATC	2 cut(s)	127, 277
NmuCI	GTSAC	2 cut(s)	196, 203
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	376, 427
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp1406I	AACGTT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	194
SatI	GCNGC	2 cut(s)	375, 426
Sau3AI	GATC	2 cut(s)	127, 277
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	6 cut(s)	48, 58, 145, 183, 205, 455
SexAI	ACCWGGT	1 cut(s)	139
SfaNI	GCATC	2 cut(s)	22, 357
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	147, 167
SmoI	CTYRAG	2 cut(s)	147, 167
Sse9I	AATT	6 cut(s)	156, 208, 223, 305, 393, 417
SspMI	CTAG	3 cut(s)	47, 83, 116
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	30
TasI	AATT	6 cut(s)	156, 208, 223, 305, 393, 417
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	2 cut(s)	138, 331
TseFI	GTSAC	2 cut(s)	196, 203
TseI	GCWGC	2 cut(s)	374, 425
Tsp45I	GTSAC	2 cut(s)	196, 203
TspDTI	ATGAA	3 cut(s)	191, 252, 458
TspRI	CASTG	2 cut(s)	138, 331
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	223
XspI	CTAG	3 cut(s)	47, 83, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.