Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

56048401 .. 56049859

Gene Structure 1459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50899

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTTTTTTTTTTTTTTTGTACCAGTCATCTCGTTTCAAGCCCTACAGGCTACAGCCGCGACTTGCCGTCTTGCCGACTTGGACTCTCGGACTCTTGGAGGCTGGCCGCTGGAGCACAGAGGCGCAGAGGCGGCAGAGCAATCTGACTCACTCAGCGACCCGGGTCACCCGGCGATCTGCAAAAGTGCAAGGCTGGAAGCCTGGAACCAGCAACTGAGCAACCCATCTCCGGTAATCCGGTCTCCGAGGCTCCGAGATCCCCACCGCGGCACCGCCACGGCGCCTCCAGCCCACCACTCCACCAGCAACCCCTCTGGTTGTCTCCGTCACTCCGTGGACCGTGATTTGCAGAAATTCCCAGATTTGCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.64

Weight (kDa)

7.84

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	269, 280
AccII	CGCG	2 cut(s)	59, 267
AciI	CCGC	6 cut(s)	57, 107, 131, 265, 267, 273
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	281
AdeI	CACNNNGTG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	229, 266
AgsI	TTSAA	1 cut(s)	38
AhdI	GACNNNNNGTC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	200
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	2 cut(s)	246, 326
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	125, 283
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	3 cut(s)	161, 162, 170
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	2 cut(s)	269, 280
Bbv12I	GWGCWC	1 cut(s)	117
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	2 cut(s)	51, 294
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	3 cut(s)	161, 162, 170
BcoDI	GTCTC	2 cut(s)	246, 326
BfmI	CTRYAG	2 cut(s)	44, 51
BfoI	RGCGCY	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	4 cut(s)	57, 107, 132, 268
BlsI	GCNGC	4 cut(s)	58, 108, 133, 269
Bme1390I	CCNGG	4 cut(s)	161, 162, 170, 202
Bme18I	GGWCC	1 cut(s)	337
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	4 cut(s)	206, 251, 271, 282
BmrFI	CCNGG	4 cut(s)	161, 162, 170, 202
BoxI	GACNNNNGTC	1 cut(s)	162
BpmI	CTGGAG	2 cut(s)	131, 270
BpuMI	CCSGG	3 cut(s)	161, 162, 170
BsaHI	GRCGYC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	5 cut(s)	160, 245, 265, 276, 333
BsaWI	WCCGGW	2 cut(s)	229, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 266
Bse1I	ACTGG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	5 cut(s)	160, 245, 265, 276, 333
BseLI	CCNNNNNNNGG	2 cut(s)	229, 266
BseMII	CTCAG	2 cut(s)	166, 206
BseNI	ACTGG	1 cut(s)	23
Bsh1236I	CGCG	2 cut(s)	59, 267
BshFI	GGCC	1 cut(s)	106
BshNI	GGYRCC	2 cut(s)	269, 280
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	160
BsiSI	CCGG	4 cut(s)	161, 170, 230, 238
BslI	CCNNNNNNNGG	2 cut(s)	229, 266
BsmAI	GTCTC	2 cut(s)	246, 326
BsnI	GGCC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	174, 256
BspACI	CCGC	6 cut(s)	57, 107, 131, 265, 267, 273
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	165, 207
BspFNI	CGCG	2 cut(s)	59, 267
BspLI	GGNNCC	4 cut(s)	206, 251, 271, 282
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	2 cut(s)	269, 280
BspTNI	GGTCTC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	5 cut(s)	160, 245, 265, 276, 333
BssMI	GATC	2 cut(s)	174, 256
BssNI	GRCGYC	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	341
BstACI	GRCGYC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	152, 215
BstDSI	CCRYGG	3 cut(s)	265, 276, 333
BstEII	GGTNACC	1 cut(s)	164
BstFNI	CGCG	2 cut(s)	59, 267
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	2 cut(s)	125, 283
BstKTI	GATC	2 cut(s)	177, 259
BstMAI	GTCTC	2 cut(s)	246, 326
BstMBI	GATC	2 cut(s)	174, 256
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 56, 112, 131, 287
BstNI	CCWGG	1 cut(s)	202
BstPAI	GACNNNNGTC	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	164
BstSCI	CCNGG	4 cut(s)	159, 160, 168, 200
BstSFI	CTRYAG	2 cut(s)	44, 51
BstUI	CGCG	2 cut(s)	59, 267
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	106
BtgI	CCRYGG	3 cut(s)	265, 276, 333
Cac8I	GCNNGC	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	2 cut(s)	125, 283
Cfr13I	GGNCC	1 cut(s)	337
Cfr42I	CCGCGG	1 cut(s)	268
Cfr9I	CCCGGG	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	20
CviJI	RGCY	9 cut(s)	41, 50, 56, 102, 106, 193, 200, 250, 290
CviKI_1	RGCY	9 cut(s)	41, 50, 56, 102, 106, 193, 200, 250, 290
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	152, 215
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	2 cut(s)	176, 258
DpnII	GATC	2 cut(s)	174, 256
DraIII	CACNNNGTG	1 cut(s)	334
DriI	GACNNNNNGTC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	104
Eam1105I	GACNNNNNGTC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	164
EcoO65I	GGTNACC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	200
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
Fnu4HI	GCNGC	4 cut(s)	57, 107, 132, 268
Fsp4HI	GCNGC	4 cut(s)	57, 107, 132, 268
GlaI	GCGC	2 cut(s)	124, 282
GluI	GCNGC	4 cut(s)	57, 107, 132, 268
GsuI	CTGGAG	2 cut(s)	131, 270
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	4 cut(s)	161, 170, 230, 238
HhaI	GCGC	2 cut(s)	125, 283
Hin1I	GRCGYC	1 cut(s)	281
Hin6I	GCGC	2 cut(s)	123, 281
HinP1I	GCGC	2 cut(s)	123, 281
HinfI	GANTC	3 cut(s)	83, 91, 146
HpaII	CCGG	4 cut(s)	161, 170, 230, 238
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	4 cut(s)	90, 145, 246, 254
Hpy8I	GTNNAC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	4 cut(s)	180, 188, 349, 367
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 56, 112, 131, 287
HpyF3I	CTNAG	2 cut(s)	152, 215
Hsp92I	GRCGYC	1 cut(s)	281
HspAI	GCGC	2 cut(s)	123, 281
KasI	GGCGCC	1 cut(s)	280
KspI	CCGCGG	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	174, 256
LmnI	GCTCC	2 cut(s)	112, 255
MaeIII	GTNAC	2 cut(s)	164, 326
MalI	GATC	2 cut(s)	176, 258
MboI	GATC	2 cut(s)	174, 256
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	353
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	3 cut(s)	77, 85, 140
MnlI	CCTC	6 cut(s)	92, 113, 121, 240, 294, 322
MspA1I	CMGCKG	2 cut(s)	109, 267
MspI	CCGG	4 cut(s)	161, 170, 230, 238
MspR9I	CCNGG	4 cut(s)	161, 162, 170, 202
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	2 cut(s)	59, 267
MwoI	GCNNNNNNNGC	5 cut(s)	47, 56, 112, 131, 287
NarI	GGCGCC	1 cut(s)	281
NciI	CCSGG	3 cut(s)	161, 162, 170
NdeII	GATC	2 cut(s)	174, 256
NlaIV	GGNNCC	4 cut(s)	206, 251, 271, 282
NmuCI	GTSAC	2 cut(s)	164, 326
PkrI	GCNGC	4 cut(s)	58, 108, 133, 269
PleI	GAGTC	3 cut(s)	77, 85, 140
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	3 cut(s)	77, 85, 140
PshAI	GACNNNNGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	4 cut(s)	206, 251, 271, 282
PspPI	GGNCC	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	268
SatI	GCNGC	4 cut(s)	57, 107, 132, 268
Sau3AI	GATC	2 cut(s)	174, 256
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	3 cut(s)	77, 85, 140
ScrFI	CCNGG	4 cut(s)	161, 162, 170, 202
SduI	GDGCHC	1 cut(s)	117
SfcI	CTRYAG	2 cut(s)	44, 51
SfoI	GGCGCC	1 cut(s)	282
Sfr303I	CCGCGG	1 cut(s)	268
SgrBI	CCGCGG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	337
SmaI	CCCGGG	1 cut(s)	162
Sse9I	AATT	1 cut(s)	353
SsiI	CCGC	6 cut(s)	57, 107, 131, 265, 267, 273
SspDI	GGCGCC	1 cut(s)	280
StyD4I	CCNGG	4 cut(s)	159, 160, 168, 200
TaaI	ACNGT	1 cut(s)	341
TasI	AATT	1 cut(s)	353
TauI	GCSGC	4 cut(s)	59, 109, 134, 270
TseFI	GTSAC	2 cut(s)	164, 326
Tsp45I	GTSAC	2 cut(s)	164, 326
TspGWI	ACGGA	2 cut(s)	314, 322
TspMI	CCCGGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	1 cut(s)	353
XmaI	CCCGGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.