Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

15399406 .. 15400232

Gene Structure 827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG179100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTGGACCAGAACAATGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCCGGAGTTCTAGCAATATCTGATCCACTAAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAGTGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAACTACAAATTCTATTGCCAATGAAGTTGGTATTGATACTGTTATAGCCGAAGCGAAACCTGACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTATGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTGACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGCAACTTGGAGGATGTGATAACTGCCATTGATCTTTCAAGGAAAACCTTCAACCGTATTCGTTTGAACTACATTTGGGCTTTGGGATATAATGTGCTCGGGATCCCAATAGCTGCAGGAGTTCTCTTCCCATCCACTGGATTTCGCTTACCCCCTTGGATTGCTGGAGCTGCAATGGCTGCTTCTTCTGTCAGTATTGTTTGCTGTTCATTGTTGTTGAAGAACTATAAGAGACCCAAGGAGCTGAATAACCTTGAGGTGCGTGGAATAGTGATCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

241

Amino Acids

25.35

Weight (kDa)

4.51

Isoelectric Point (pI)

20.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	13 - 126	7.5e-21	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	581
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	3 cut(s)	122, 541, 554
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	2 cut(s)	78, 297
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	483, 496, 511, 664
AjnI	CCWGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	4 cut(s)	56, 557, 614, 688
AluI	AGCT	4 cut(s)	56, 557, 614, 688
Alw21I	GWGCWC	2 cut(s)	148, 543
Alw26I	GTCTC	1 cut(s)	670
AlwI	GGATC	3 cut(s)	122, 541, 554
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	4 cut(s)	422, 557, 614, 623
ApoI	RAATTY	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	208, 215, 348
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	7
BamHI	GGATCC	1 cut(s)	546
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	2 cut(s)	148, 543
BbvI	GCAGC	4 cut(s)	434, 544, 601, 610
BccI	CCATC	4 cut(s)	89, 325, 335, 583
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	670
BfaI	CTAG	3 cut(s)	47, 83, 116
BfmI	CTRYAG	1 cut(s)	558
BisI	GCNGC	5 cut(s)	372, 423, 558, 615, 624
BlsI	GCNGC	5 cut(s)	373, 424, 559, 616, 625
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	22, 354
BmuI	ACTGGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	630
BpuEI	CTTGAG	3 cut(s)	132, 152, 719
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	2 cut(s)	599, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	2 cut(s)	79, 586
Bse3DI	GCAATG	2 cut(s)	408, 624
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	599, 681
BseGI	GGATG	2 cut(s)	463, 575
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	2 cut(s)	408, 624
BseNI	ACTGG	2 cut(s)	79, 586
BseXI	GCAGC	4 cut(s)	434, 544, 601, 610
BshFI	GGCC	1 cut(s)	107
BsiHKAI	GWGCWC	2 cut(s)	148, 543
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	1 cut(s)	670
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	148, 543
Bsp143I	GATC	4 cut(s)	127, 475, 546, 717
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	548
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	3 cut(s)	122, 541, 554
BspQI	GCTCTTC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	408, 624
BsrI	ACTGG	2 cut(s)	79, 586
BssECI	CCNNGG	2 cut(s)	599, 681
BssMI	GATC	4 cut(s)	127, 475, 546, 717
BssT1I	CCWWGG	2 cut(s)	599, 681
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	256, 500
Bst6I	CTCTTC	2 cut(s)	437, 575
BstAPI	GCANNNNNTGC	2 cut(s)	395, 623
BstC8I	GCNNGC	3 cut(s)	66, 309, 400
BstF5I	GGATG	2 cut(s)	463, 575
BstKTI	GATC	4 cut(s)	130, 478, 549, 720
BstMAI	GTCTC	1 cut(s)	670
BstMBI	GATC	4 cut(s)	127, 475, 546, 717
BstMWI	GCNNNNNNNGC	6 cut(s)	368, 395, 419, 614, 620, 623
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	4 cut(s)	434, 544, 601, 610
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	463, 575
BtsIMutI	CAGTG	2 cut(s)	402, 579
Cac8I	GCNNGC	3 cut(s)	66, 309, 400
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	7
CsiI	ACCWGGT	1 cut(s)	139
DpnI	GATC	4 cut(s)	129, 477, 548, 719
DpnII	GATC	4 cut(s)	127, 475, 546, 717
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	437, 575
EarI	CTCTTC	2 cut(s)	437, 575
Eco130I	CCWWGG	2 cut(s)	599, 681
Eco31I	GGTCTC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	78, 297
Eco88I	CYCGRG	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	599, 681
ErhI	CCWWGG	2 cut(s)	599, 681
FaiI	YATR	7 cut(s)	92, 164, 191, 260, 326, 534, 672
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
Fnu4HI	GCNGC	5 cut(s)	372, 423, 558, 615, 624
FokI	GGATG	2 cut(s)	470, 562
Fsp4HI	GCNGC	5 cut(s)	372, 423, 558, 615, 624
FspBI	CTAG	3 cut(s)	47, 83, 116
GluI	GCNGC	5 cut(s)	372, 423, 558, 615, 624
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	108
HinfI	GANTC	2 cut(s)	79, 353
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	3 cut(s)	208, 215, 348
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	149, 544
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	53, 292, 502
HpyCH4III	ACNGT	2 cut(s)	256, 500
HpyCH4V	TGCA	6 cut(s)	20, 35, 307, 413, 560, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	368, 395, 419, 614, 620, 623
Kzo9I	GATC	4 cut(s)	127, 475, 546, 717
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	2 cut(s)	611, 685
Lsp1109I	GCAGC	4 cut(s)	434, 544, 601, 610
LweI	GCATC	2 cut(s)	22, 354
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	3 cut(s)	47, 83, 116
MaeIII	GTNAC	2 cut(s)	196, 203
MalI	GATC	4 cut(s)	129, 477, 548, 719
MboI	GATC	4 cut(s)	127, 475, 546, 717
MboII	GAAGA	5 cut(s)	50, 454, 562, 621, 676
MfeI	CAATTG	3 cut(s)	208, 390, 414
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	2 cut(s)	148, 543
MluCI	AATT	6 cut(s)	156, 208, 223, 302, 390, 414
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	3 cut(s)	412, 448, 694
MroXI	GAANNNNTTC	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	3 cut(s)	208, 390, 414
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	6 cut(s)	368, 395, 419, 614, 620, 623
NdeII	GATC	4 cut(s)	127, 475, 546, 717
NlaIV	GGNNCC	1 cut(s)	548
NmuCI	GTSAC	2 cut(s)	196, 203
PciSI	GCTCTTC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	581
PkrI	GCNGC	5 cut(s)	373, 424, 559, 616, 625
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	548
PspPI	GGNCC	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	546
RseI	CAYNNNNRTG	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	437
SatI	GCNGC	5 cut(s)	372, 423, 558, 615, 624
Sau3AI	GATC	4 cut(s)	127, 475, 546, 717
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	148, 543
SexAI	ACCWGGT	1 cut(s)	139
SfaNI	GCATC	2 cut(s)	22, 354
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	3 cut(s)	147, 167, 698
SmoI	CTYRAG	3 cut(s)	147, 167, 698
Sse9I	AATT	6 cut(s)	156, 208, 223, 302, 390, 414
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	3 cut(s)	47, 83, 116
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	2 cut(s)	599, 681
TaaI	ACNGT	2 cut(s)	256, 500
TaqI	TCGA	2 cut(s)	30, 720
TasI	AATT	6 cut(s)	156, 208, 223, 302, 390, 414
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	2 cut(s)	409, 586
TseFI	GTSAC	2 cut(s)	196, 203
TseI	GCWGC	4 cut(s)	422, 557, 614, 623
Tsp45I	GTSAC	2 cut(s)	196, 203
TspDTI	ATGAA	3 cut(s)	252, 455, 642
TspRI	CASTG	2 cut(s)	409, 586
Van91I	CCANNNNNTGG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	3 cut(s)	47, 83, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.