Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002263.1

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

97695 .. 98445

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002263.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ctgagtgctatttttgagtgtgccaaggccattgttgagtatgccaaaaaattcagagaagatgaagagaatccagccgggccagaagcgcatgactttgcctccattactggtcacggggtgaaggctattgttcaggacagggaaataattgtgggtaacaagagcttgatggtggaccagaacattgcagttccactcgatgcagaagactacctagcagaagctgaagggctggctcaaattgggattctagtagccatagatggagaagtggctggagttctagcaatatctggtccactgaaaccaggttctcaagaagtaattaccatactcaagtcaatgaatgttagaagcttaatggtgacaggtgacaattggggaactgcaaattctattgccaatgaagttggtattgatattgttatagccgaagcgaaacttgatcaccagaaagcagagaaagtgaaggaattgcaggcttcaggctacactgtggcgatggtgggagatggcatcaatgactcaccagcacttgtggcggcagatgtaggaatggcaattggtgttggcactaacattgcaattgaggcagcagacattgtgctaatgaagagtaggtttcctctttattttctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

214

Amino Acids

22.5

Weight (kDa)

4.48

Isoelectric Point (pI)

25.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	545
AcsI	RAATTY	2 cut(s)	50, 394
AcuI	CTGAAG	2 cut(s)	249, 471
AdeI	CACNNNGTG	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	3 cut(s)	168, 227, 360
AluI	AGCT	3 cut(s)	168, 227, 360
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	27, 80
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	2 cut(s)	50, 394
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	3 cut(s)	80, 178, 299
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	5 cut(s)	133, 379, 386, 443, 522
AvaII	GGWCC	2 cut(s)	178, 299
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	4 cut(s)	166, 260, 499, 509
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	79
BfaI	CTAG	3 cut(s)	218, 254, 287
BisI	GCNGC	2 cut(s)	546, 597
BlsI	GCNGC	2 cut(s)	547, 598
Bme1390I	CCNGG	2 cut(s)	79, 312
Bme18I	GGWCC	2 cut(s)	178, 299
BmgT120I	GGNCC	3 cut(s)	80, 178, 299
BmrFI	CCNGG	2 cut(s)	79, 312
BmsI	GCATC	2 cut(s)	193, 528
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	303, 323
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	2 cut(s)	186, 582
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	24
BseMI	GCAATG	2 cut(s)	186, 582
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	608
BshFI	GGCC	2 cut(s)	29, 82
BsiSI	CCGG	1 cut(s)	78
BsnI	GGCC	2 cut(s)	29, 82
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	2 cut(s)	29, 82
BsrDI	GCAATG	2 cut(s)	186, 582
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	2 cut(s)	60, 611
BstC8I	GCNNGC	2 cut(s)	237, 483
BstDEI	CTNAG	1 cut(s)	2
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 542, 593
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	77, 310
BstV1I	GCAGC	1 cut(s)	608
BstV2I	GAAGAC	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	29, 82
BtgZI	GCGATG	1 cut(s)	518
BtsIMutI	CAGTG	2 cut(s)	302, 495
Cac8I	GCNNGC	2 cut(s)	237, 483
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	3 cut(s)	80, 178, 299
CsiI	ACCWGGT	1 cut(s)	310
CviAII	CATG	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	2
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DraIII	CACNNNGTG	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	60, 611
EarI	CTCTTC	2 cut(s)	60, 611
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	178, 299
Eco57I	CTGAAG	2 cut(s)	249, 471
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	95
FaiI	YATR	5 cut(s)	42, 93, 263, 335, 431
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	546, 597
Fsp4HI	GCNGC	2 cut(s)	546, 597
FspBI	CTAG	3 cut(s)	218, 254, 287
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	2 cut(s)	546, 597
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	29, 82
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	3 cut(s)	70, 250, 527
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	5 cut(s)	133, 379, 386, 443, 522
Hpy166II	GTNNAC	2 cut(s)	178, 302
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	137, 320
Hpy8I	GTNNAC	2 cut(s)	178, 302
HpyAV	CCTTC	3 cut(s)	118, 224, 466
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	5 cut(s)	191, 206, 392, 481, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 542, 593
HpyF3I	CTNAG	1 cut(s)	2
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	448
Lsp1109I	GCAGC	1 cut(s)	608
LweI	GCATC	2 cut(s)	193, 528
MabI	ACCWGGT	1 cut(s)	310
MaeI	CTAG	3 cut(s)	218, 254, 287
MaeIII	GTNAC	4 cut(s)	113, 158, 367, 374
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	4 cut(s)	71, 77, 221, 628
MfeI	CAATTG	3 cut(s)	379, 564, 588
MluCI	AATT	9 cut(s)	50, 150, 243, 327, 379, 394, 476, 564, 588
MlyI	GAGTC	1 cut(s)	521
MnlI	CCTC	3 cut(s)	112, 586, 639
MseI	TTAA	1 cut(s)	362
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	79, 312
MunI	CAATTG	3 cut(s)	379, 564, 588
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	88, 542, 593
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	1 cut(s)	95
NmuCI	GTSAC	3 cut(s)	113, 367, 374
PfeI	GAWTC	2 cut(s)	70, 250
PkrI	GCNGC	2 cut(s)	547, 598
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspPI	GGNCC	3 cut(s)	80, 178, 299
PstNI	CAGNNNCTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	2 cut(s)	546, 597
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	3 cut(s)	80, 178, 299
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	2 cut(s)	79, 312
SetI	ASST	7 cut(s)	170, 219, 229, 316, 362, 376, 626
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	193, 528
SinI	GGWCC	2 cut(s)	178, 299
SmlI	CTYRAG	2 cut(s)	318, 338
SmoI	CTYRAG	2 cut(s)	318, 338
Sse9I	AATT	9 cut(s)	50, 150, 243, 327, 379, 394, 476, 564, 588
SsiI	CCGC	1 cut(s)	545
SspMI	CTAG	3 cut(s)	218, 254, 287
StyD4I	CCNGG	2 cut(s)	77, 310
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	201
TasI	AATT	9 cut(s)	50, 150, 243, 327, 379, 394, 476, 564, 588
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	70, 250
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	2 cut(s)	309, 502
TseFI	GTSAC	3 cut(s)	113, 367, 374
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	3 cut(s)	113, 367, 374
TspDTI	ATGAA	4 cut(s)	78, 362, 423, 629
TspRI	CASTG	2 cut(s)	309, 502
VpaK11BI	GGWCC	2 cut(s)	178, 299
XapI	RAATTY	2 cut(s)	50, 394
XspI	CTAG	3 cut(s)	218, 254, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.