Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

38354804 .. 38357860

Gene Structure 3057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG336700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATAGCTATCAGCTTGCTCTCCAGTTTGGGATCTCTGTCATGGTTATTGCGCGCCCTTGTGCTCTAGGCCTAGCAACTCCTACTGCTGTCATGGTTGGTACGGGAGTCGGTGCATCCCAAGGTGTACTGATCAAAGGAGGTCAAGCATTAGAAAGTGCACATAAGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTTACAATTGGGCCAGAAGCGCATGACTTTGCCTCCATTACTGGTCAAGGGGTGAAGGCTATTGTTCAGGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCATTATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGGTGACAAGTGACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGATTGGTCGCCACCTCTTCAGACCAGGATTGAACACAGGGCTTGCCTGCCTTCTGACGATAAAGTCTCCTGTTTCGGCGAAGTATATGAGAAATTCTGCTGTGGCTGGGACTGACGATGGTTTATTGGGTGCTGTTCACGCAACCCAGGAAGAGCACTATACCGCCAATCCCGCCATACGTCTTACTTACACCCTGTCCCACAATATCGTCGTCATTAAGACGCTAGAATCAGCGGCCGAACTAGTCCAAAGAAGCTGTTGTGACGAACTTGGGTTCGAAAAGAGAATGTTGCAAGGTCAACCACTTGATGAAGGAAACGAAAGCCACCCTCGTGGCACATACTATTTCACTTTTACCCCGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

303

Amino Acids

32.0

Weight (kDa)

5.15

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	57 - 184	4.5e-11	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	607
AccII	CGCG	1 cut(s)	55
AciI	CCGC	3 cut(s)	708, 717, 779
AclWI	GGATC	2 cut(s)	41, 425
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	1 cut(s)	637
AcuI	CTGAAG	2 cut(s)	381, 547
AfaI	GTAC	2 cut(s)	103, 129
AgsI	TTSAA	1 cut(s)	577
AhlI	ACTAGT	1 cut(s)	787
AjnI	CCWGG	3 cut(s)	442, 568, 690
AleI	CACNNNNGTG	1 cut(s)	876
AluBI	AGCT	5 cut(s)	9, 16, 300, 359, 801
AluI	AGCT	5 cut(s)	9, 16, 300, 359, 801
Alw21I	GWGCWC	4 cut(s)	67, 163, 451, 702
Alw26I	GTCTC	1 cut(s)	615
Alw44I	GTGCAC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	41, 425
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	70, 212, 780
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	637
AspLEI	GCGC	3 cut(s)	55, 57, 223
AspS9I	GGNCC	2 cut(s)	212, 310
AsuHPI	GGTGA	2 cut(s)	265, 511
AsuII	TTCGAA	1 cut(s)	822
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BauI	CACGAG	1 cut(s)	876
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	4 cut(s)	67, 163, 451, 702
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	3 cut(s)	298, 392, 656
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	3 cut(s)	444, 570, 692
BclI	TGATCA	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	615
BcuI	ACTAGT	1 cut(s)	787
BfaI	CTAG	7 cut(s)	68, 74, 350, 386, 419, 770, 788
BisI	GCNGC	2 cut(s)	525, 780
BlsI	GCNGC	2 cut(s)	526, 781
Bme1390I	CCNGG	3 cut(s)	444, 570, 692
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	212, 310
BmrFI	CCNGG	3 cut(s)	444, 570, 692
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	2 cut(s)	125, 325
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	2 cut(s)	8, 432
Bpu14I	TTCGAA	1 cut(s)	822
BpuEI	CTTGAG	2 cut(s)	435, 455
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	121, 690
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bse1I	ACTGG	3 cut(s)	25, 247, 382
Bse3DI	GCAATG	2 cut(s)	318, 510
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	444, 570, 692
BseDI	CCNNGG	2 cut(s)	121, 690
BseGI	GGATG	1 cut(s)	116
BseJI	GATNNNNATC	1 cut(s)	9
BseMI	GCAATG	2 cut(s)	318, 510
BseNI	ACTGG	3 cut(s)	25, 247, 382
BsePI	GCGCGC	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	163
BseX3I	CGGCCG	1 cut(s)	780
BseXI	GCAGC	1 cut(s)	536
BseYI	CCCAGC	1 cut(s)	650
Bsh1236I	CGCG	1 cut(s)	55
Bsh1285I	CGRYCG	1 cut(s)	783
BshFI	GGCC	3 cut(s)	72, 214, 782
BsiEI	CGRYCG	1 cut(s)	783
BsiHKAI	GWGCWC	4 cut(s)	67, 163, 451, 702
BslFI	GGGAC	3 cut(s)	211, 667, 727
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	3 cut(s)	211, 667, 727
BsnI	GGCC	3 cut(s)	72, 214, 782
Bsp119I	TTCGAA	1 cut(s)	822
Bsp1286I	GDGCHC	4 cut(s)	67, 163, 451, 702
Bsp143I	GATC	3 cut(s)	33, 132, 430
BspACI	CCGC	3 cut(s)	708, 717, 779
BspANI	GGCC	3 cut(s)	72, 214, 782
BspFNI	CGCG	1 cut(s)	55
BspPI	GGATC	2 cut(s)	41, 425
BspQI	GCTCTTC	1 cut(s)	690
BspT104I	TTCGAA	1 cut(s)	822
BsrDI	GCAATG	2 cut(s)	318, 510
BsrI	ACTGG	3 cut(s)	25, 247, 382
BssECI	CCNNGG	2 cut(s)	121, 690
BssHII	GCGCGC	1 cut(s)	53
BssMI	GATC	3 cut(s)	33, 132, 430
BssSI	CACGAG	1 cut(s)	876
BssT1I	CCWWGG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	876
Bst2UI	CCWGG	3 cut(s)	444, 570, 692
Bst6I	CTCTTC	2 cut(s)	566, 690
BstBI	TTCGAA	1 cut(s)	822
BstC8I	GCNNGC	5 cut(s)	18, 55, 369, 588, 592
BstF5I	GGATG	1 cut(s)	116
BstFNI	CGCG	1 cut(s)	55
BstHHI	GCGC	3 cut(s)	55, 57, 223
BstKTI	GATC	3 cut(s)	36, 135, 433
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	3 cut(s)	33, 132, 430
BstMCI	CGRYCG	1 cut(s)	783
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 521, 683, 716
BstNI	CCWGG	3 cut(s)	444, 570, 692
BstSCI	CCNGG	3 cut(s)	442, 568, 690
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	536
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	878
BstYI	RGATCY	1 cut(s)	33
BstZI	CGGCCG	1 cut(s)	780
BsuRI	GGCC	3 cut(s)	72, 214, 782
BtsCI	GGATG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	5 cut(s)	18, 55, 369, 588, 592
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	3 cut(s)	55, 57, 223
Cfr13I	GGNCC	2 cut(s)	212, 310
CseI	GACGC	1 cut(s)	775
CsiI	ACCWGGT	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	102, 128
CviAII	CATG	3 cut(s)	43, 94, 224
CviQI	GTAC	2 cut(s)	102, 128
DpnI	GATC	3 cut(s)	35, 134, 432
DpnII	GATC	3 cut(s)	33, 132, 430
DrdI	GACNNNNNNGTC	1 cut(s)	607
DseDI	GACNNNNNNGTC	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	780
EagI	CGGCCG	1 cut(s)	780
Eam1104I	CTCTTC	2 cut(s)	566, 690
EarI	CTCTTC	2 cut(s)	566, 690
EclXI	CGGCCG	1 cut(s)	780
Eco130I	CCWWGG	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	310
Eco52I	CGGCCG	1 cut(s)	780
Eco57I	CTGAAG	2 cut(s)	381, 547
EcoRII	CCWGG	3 cut(s)	442, 568, 690
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	3 cut(s)	46, 97, 227
FaqI	GGGAC	3 cut(s)	211, 667, 727
FatI	CATG	3 cut(s)	42, 93, 223
FauI	CCCGC	1 cut(s)	724
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	525, 780
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	525, 780
FspBI	CTAG	7 cut(s)	68, 74, 350, 386, 419, 770, 788
GlaI	GCGC	3 cut(s)	54, 56, 222
GluI	GCNGC	2 cut(s)	525, 780
GsaI	CCCAGC	1 cut(s)	654
GsuI	CTGGAG	2 cut(s)	8, 432
HaeIII	GGCC	3 cut(s)	72, 214, 782
HgaI	GACGC	1 cut(s)	775
HhaI	GCGC	3 cut(s)	55, 57, 223
Hin1II	CATG	3 cut(s)	46, 97, 227
Hin6I	GCGC	3 cut(s)	53, 55, 221
HinP1I	GCGC	3 cut(s)	53, 55, 221
HincII	GTYRAC	1 cut(s)	845
HindII	GTYRAC	1 cut(s)	845
HinfI	GANTC	4 cut(s)	108, 199, 382, 773
HphI	GGTGA	2 cut(s)	265, 511
Hpy166II	GTNNAC	6 cut(s)	128, 161, 172, 310, 682, 845
Hpy188I	TCNGA	3 cut(s)	430, 566, 600
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	6 cut(s)	128, 161, 172, 310, 682, 845
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	4 cut(s)	250, 356, 605, 851
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	7 cut(s)	116, 161, 177, 323, 338, 515, 838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 521, 683, 716
HpySE526I	ACGT	1 cut(s)	724
Hsp92II	CATG	3 cut(s)	46, 97, 227
HspAI	GCGC	3 cut(s)	53, 55, 221
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	33, 132, 430
LguI	GCTCTTC	1 cut(s)	690
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	2 cut(s)	125, 325
MabI	ACCWGGT	1 cut(s)	442
MaeI	CTAG	7 cut(s)	68, 74, 350, 386, 419, 770, 788
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	3 cut(s)	499, 506, 806
MalI	GATC	3 cut(s)	35, 134, 432
MboI	GATC	3 cut(s)	33, 132, 430
MboII	GAAGA	4 cut(s)	353, 553, 556, 707
MfeI	CAATTG	2 cut(s)	207, 516
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	4 cut(s)	67, 163, 451, 702
MluCI	AATT	5 cut(s)	207, 282, 459, 516, 637
MlyI	GAGTC	2 cut(s)	117, 193
MnlI	CCTC	5 cut(s)	134, 244, 514, 569, 885
MseI	TTAA	1 cut(s)	762
MslI	CAYNNNNRTG	2 cut(s)	497, 876
MspA1I	CMGCKG	1 cut(s)	779
MspR9I	CCNGG	3 cut(s)	444, 570, 692
MunI	CAATTG	2 cut(s)	207, 516
MvaI	CCWGG	3 cut(s)	444, 570, 692
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	4 cut(s)	220, 521, 683, 716
NdeII	GATC	3 cut(s)	33, 132, 430
NlaIII	CATG	3 cut(s)	46, 97, 227
NmuCI	GTSAC	3 cut(s)	499, 506, 806
NspV	TTCGAA	1 cut(s)	822
OliI	CACNNNNGTG	1 cut(s)	876
PauI	GCGCGC	1 cut(s)	53
PceI	AGGCCT	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	690
PfeI	GAWTC	2 cut(s)	382, 773
PkrI	GCNGC	2 cut(s)	526, 781
PleI	GAGTC	2 cut(s)	116, 193
PpsI	GAGTC	2 cut(s)	116, 193
Psp6I	CCWGG	3 cut(s)	442, 568, 690
PspFI	CCCAGC	1 cut(s)	650
PspGI	CCWGG	3 cut(s)	442, 568, 690
PspPI	GGNCC	2 cut(s)	212, 310
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	33
PteI	GCGCGC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	103, 129
RsaNI	GTAC	2 cut(s)	102, 128
RseI	CAYNNNNRTG	2 cut(s)	497, 876
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	2 cut(s)	525, 780
Sau3AI	GATC	3 cut(s)	33, 132, 430
Sau96I	GGNCC	2 cut(s)	212, 310
SchI	GAGTC	2 cut(s)	117, 193
ScrFI	CCNGG	3 cut(s)	444, 570, 692
SduI	GDGCHC	4 cut(s)	67, 163, 451, 702
SexAI	ACCWGGT	1 cut(s)	442
SfaNI	GCATC	2 cut(s)	125, 325
SfuI	TTCGAA	1 cut(s)	822
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	2 cut(s)	497, 876
SmlI	CTYRAG	2 cut(s)	450, 470
SmoI	CTYRAG	2 cut(s)	450, 470
SpeI	ACTAGT	1 cut(s)	787
Sse9I	AATT	5 cut(s)	207, 282, 459, 516, 637
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	3 cut(s)	708, 717, 779
SspMI	CTAG	7 cut(s)	68, 74, 350, 386, 419, 770, 788
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	3 cut(s)	442, 568, 690
StyI	CCWWGG	1 cut(s)	121
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	3 cut(s)	186, 333, 822
TasI	AATT	5 cut(s)	207, 282, 459, 516, 637
TatI	WGTACW	1 cut(s)	127
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	2 cut(s)	382, 773
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	3 cut(s)	499, 506, 806
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	3 cut(s)	499, 506, 806
TspDTI	ATGAA	3 cut(s)	494, 557, 870
TspRI	CASTG	1 cut(s)	441
VneI	GTGCAC	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	637
XspI	CTAG	7 cut(s)	68, 74, 350, 386, 419, 770, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.