Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

24869030 .. 24882486

Gene Structure 13457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1181400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCGGGAAAATAATGTCCAGGTTGGTCCTGAGGTTGACAAGTATGTTTCAGAACATGATAATCTGGCTCGAAGGTGTGTGTTGGTGTCCATTGATGGAAAGATTGCTGGGTCTTTTGCTGTAACTGACCCAGTGAAGCCAGAGGCTGCACGAGTCATCTCTTATCTTCACTCGATAAACATTACAAGCATCATGGTTACTGGTGATAACTGGGCTACAGCGGCAGCCAGTGCGATGGAGGTTGGCATTGATAAGGTGTATGCTGAGACGGATCCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

94

Amino Acids

10.03

Weight (kDa)

4.77

Isoelectric Point (pI)

11.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	12 - 87	1.3e-07	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 221
AclWI	GGATC	2 cut(s)	266, 279
AjnI	CCWGG	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	266, 279
AlwNI	CAGNNNCTG	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	146, 224
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	271
BauI	CACGAG	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	133, 236
BccI	CCATC	2 cut(s)	89, 229
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	3 cut(s)	147, 222, 225
BlsI	GCNGC	3 cut(s)	148, 223, 226
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	20
BmrI	ACTGGG	2 cut(s)	125, 220
BmsI	GCATC	1 cut(s)	198
BmuI	ACTGGG	2 cut(s)	125, 220
Bse1I	ACTGG	4 cut(s)	131, 205, 215, 228
Bse21I	CCTNAGG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	20
BseMII	CTCAG	2 cut(s)	21, 255
BseNI	ACTGG	4 cut(s)	131, 205, 215, 228
BseXI	GCAGC	2 cut(s)	133, 236
BseYI	CCCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	260
BsmBI	CGTCTC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	4, 221
BspCNI	CTCAG	2 cut(s)	22, 256
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	266, 279
BsrI	ACTGG	4 cut(s)	131, 205, 215, 228
BssMI	GATC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	30, 264
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 230
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	133, 236
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	248
BtsIMutI	CAGTG	2 cut(s)	138, 235
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	26
CviAII	CATG	2 cut(s)	56, 193
CviJI	RGCY	5 cut(s)	68, 139, 146, 215, 227
CviKI_1	RGCY	5 cut(s)	68, 139, 146, 215, 227
DdeI	CTNAG	2 cut(s)	30, 264
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	2 cut(s)	59, 196
FaiI	YATR	5 cut(s)	45, 57, 194, 261, 280
FatI	CATG	2 cut(s)	55, 192
Fnu4HI	GCNGC	3 cut(s)	147, 222, 225
Fsp4HI	GCNGC	3 cut(s)	147, 222, 225
GluI	GCNGC	3 cut(s)	147, 222, 225
GsaI	CCCAGC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	59, 196
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	153
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 230
HpyF3I	CTNAG	2 cut(s)	30, 264
Hsp92II	CATG	2 cut(s)	59, 196
Kzo9I	GATC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	133, 236
LweI	GCATC	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	121, 196
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	3 cut(s)	25, 136, 232
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	221, 230
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	2 cut(s)	59, 196
NlaIV	GGNNCC	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	148, 223, 226
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	271
SatI	GCNGC	3 cut(s)	147, 222, 225
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	5 cut(s)	24, 36, 77, 243, 258
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	26
SsiI	CCGC	2 cut(s)	4, 221
StyD4I	CCNGG	1 cut(s)	18
TaqI	TCGA	2 cut(s)	70, 173
TauI	GCSGC	1 cut(s)	224
TscAI	CASTG	2 cut(s)	138, 235
TseI	GCWGC	2 cut(s)	146, 224
TspRI	CASTG	2 cut(s)	138, 235
VpaK11BI	GGWCC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.