Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

58508205 .. 58510955

Gene Structure 2751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG446000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTCATCTGCAAATCCGATAACATTCAGAGAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATAACTTTGCCTCCATTACTGGTCACGGGGTGAAGGCTATTTTTCAGGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGTAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGTTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAACTGCAAATTCTATTGCCAATGAAGTTGGTATTGATATTGTTATAGCCGAAGCGAAACTTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

216

Amino Acids

22.79

Weight (kDa)

4.53

Isoelectric Point (pI)

25.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	17 - 186	2.3e-20	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	2 cut(s)	56, 400
AcuI	CTGAAG	2 cut(s)	255, 477
AdeI	CACNNNGTG	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	2 cut(s)	174, 233
AluI	AGCT	2 cut(s)	174, 233
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	33, 86
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	2 cut(s)	56, 400
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	86, 184
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	5 cut(s)	139, 385, 392, 449, 528
AvaII	GGWCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	4 cut(s)	172, 266, 505, 515
BciT130I	CCWGG	1 cut(s)	318
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	85
BfaI	CTAG	3 cut(s)	224, 260, 293
BisI	GCNGC	2 cut(s)	552, 603
BlsI	GCNGC	2 cut(s)	553, 604
Bme1390I	CCNGG	2 cut(s)	85, 318
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	86, 184
BmrFI	CCNGG	2 cut(s)	85, 318
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	199, 534
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	309, 329
BpuMI	CCSGG	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse1I	ACTGG	2 cut(s)	121, 256
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	588
BseNI	ACTGG	2 cut(s)	121, 256
BseXI	GCAGC	1 cut(s)	614
BshFI	GGCC	2 cut(s)	35, 88
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	84
BsnI	GGCC	2 cut(s)	35, 88
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	304, 454
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	2 cut(s)	35, 88
BspPI	GGATC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	121, 256
BssMI	GATC	2 cut(s)	304, 454
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	2 cut(s)	66, 617
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	489, 580
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	2 cut(s)	307, 457
BstMBI	GATC	2 cut(s)	304, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 548, 575, 599
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	83, 316
BstV1I	GCAGC	1 cut(s)	614
BstV2I	GAAGAC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	35, 88
BtgZI	GCGATG	1 cut(s)	524
BtsIMutI	CAGTG	2 cut(s)	308, 501
Cac8I	GCNNGC	2 cut(s)	489, 580
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	86, 184
CsiI	ACCWGGT	1 cut(s)	316
DpnI	GATC	2 cut(s)	306, 456
DpnII	GATC	2 cut(s)	304, 454
DraIII	CACNNNGTG	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	66, 617
EarI	CTCTTC	2 cut(s)	66, 617
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	2 cut(s)	255, 477
EcoRII	CCWGG	1 cut(s)	316
FaiI	YATR	6 cut(s)	48, 99, 269, 341, 368, 437
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	552, 603
Fsp4HI	GCNGC	2 cut(s)	552, 603
FspBI	CTAG	3 cut(s)	224, 260, 293
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	2 cut(s)	552, 603
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	35, 88
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	3 cut(s)	76, 256, 533
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	5 cut(s)	139, 385, 392, 449, 528
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	4 cut(s)	18, 29, 62, 304
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	3 cut(s)	124, 230, 472
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	5 cut(s)	11, 212, 398, 487, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 548, 575, 599
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	304, 454
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	2 cut(s)	199, 534
MabI	ACCWGGT	1 cut(s)	316
MaeI	CTAG	3 cut(s)	224, 260, 293
MaeIII	GTNAC	3 cut(s)	119, 373, 380
MalI	GATC	2 cut(s)	306, 456
MboI	GATC	2 cut(s)	304, 454
MboII	GAAGA	4 cut(s)	77, 83, 227, 634
MfeI	CAATTG	3 cut(s)	385, 570, 594
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	8 cut(s)	56, 156, 333, 385, 400, 482, 570, 594
MlyI	GAGTC	1 cut(s)	527
MnlI	CCTC	4 cut(s)	25, 118, 592, 645
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	85, 318
MunI	CAATTG	3 cut(s)	385, 570, 594
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	4 cut(s)	94, 548, 575, 599
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	304, 454
NmuCI	GTSAC	3 cut(s)	119, 373, 380
PfeI	GAWTC	2 cut(s)	76, 256
PkrI	GCNGC	2 cut(s)	553, 604
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	86, 184
PstNI	CAGNNNCTG	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	371
SatI	GCNGC	2 cut(s)	552, 603
Sau3AI	GATC	2 cut(s)	304, 454
Sau96I	GGNCC	2 cut(s)	86, 184
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	85, 318
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	6 cut(s)	176, 225, 235, 322, 382, 632
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	199, 534
SinI	GGWCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	324, 344
SmoI	CTYRAG	2 cut(s)	324, 344
Sse9I	AATT	8 cut(s)	56, 156, 333, 385, 400, 482, 570, 594
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	3 cut(s)	224, 260, 293
StyD4I	CCNGG	2 cut(s)	83, 316
TaaI	ACNGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	207
TasI	AATT	8 cut(s)	56, 156, 333, 385, 400, 482, 570, 594
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	2 cut(s)	76, 256
TscAI	CASTG	2 cut(s)	315, 508
TseFI	GTSAC	3 cut(s)	119, 373, 380
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	3 cut(s)	119, 373, 380
TspDTI	ATGAA	4 cut(s)	84, 368, 429, 635
TspRI	CASTG	2 cut(s)	315, 508
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	56, 400
XspI	CTAG	3 cut(s)	224, 260, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.