Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

17374983 .. 17379469

Gene Structure 4487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG099400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAAAAATATAGTGCTTCGGGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCTGGCCCAGAAGCGCATGACTTTGCCTCCATTAATGGTCACGGGGTGAAGGCTATTGTTCAGGGCAAGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAATCCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAACTGCAAATTCTATTGCCAATGTGGCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

166

Amino Acids

17.87

Weight (kDa)

5.11

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	10 - 153	3.5e-13	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	3 cut(s)	23, 101, 445
AcuI	CTGAAG	1 cut(s)	300
AdeI	CACNNNGTG	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	4 cut(s)	47, 128, 219, 278
AluI	AGCT	4 cut(s)	47, 128, 219, 278
Alw21I	GWGCWC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	3 cut(s)	72, 78, 130
ApeKI	GCWGC	2 cut(s)	41, 44
ApoI	RAATTY	3 cut(s)	23, 101, 445
AseI	ATTAAT	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	131, 229
AsuHPI	GGTGA	4 cut(s)	184, 430, 437, 472
AvaII	GGWCC	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	370
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	28, 56
BccI	CCATC	2 cut(s)	217, 311
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	477
BfaI	CTAG	3 cut(s)	269, 305, 338
BfmI	CTRYAG	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	2 cut(s)	42, 45
BlsI	GCNGC	2 cut(s)	43, 46
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	131, 229
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	354, 374
BsaJI	CCNNGG	2 cut(s)	69, 75
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	69, 75
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	28, 56
BshFI	GGCC	3 cut(s)	74, 80, 132
BsiHKAI	GWGCWC	1 cut(s)	370
BsnI	GGCC	3 cut(s)	74, 80, 132
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	349, 477
BspANI	GGCC	3 cut(s)	74, 80, 132
BspCNI	CTCAG	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	69, 75
BssMI	GATC	2 cut(s)	349, 477
BssT1I	CCWWGG	2 cut(s)	69, 75
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	130, 288
BstDEI	CTNAG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	2 cut(s)	352, 480
BstMBI	GATC	2 cut(s)	349, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	28, 56
BstV2I	GAAGAC	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	74, 80, 132
BtsIMutI	CAGTG	2 cut(s)	64, 353
Cac8I	GCNNGC	2 cut(s)	130, 288
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	131, 229
CviAII	CATG	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	2 cut(s)	351, 479
DpnII	GATC	2 cut(s)	349, 477
DraIII	CACNNNGTG	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	69, 75
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	69, 75
ErhI	CCWWGG	2 cut(s)	69, 75
FaeI	CATG	1 cut(s)	146
FaiI	YATR	7 cut(s)	11, 30, 93, 144, 314, 386, 413
FatI	CATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	477
Fnu4HI	GCNGC	2 cut(s)	42, 45
Fsp4HI	GCNGC	2 cut(s)	42, 45
FspBI	CTAG	3 cut(s)	269, 305, 338
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	2 cut(s)	42, 45
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	74, 80, 132
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	3 cut(s)	121, 301, 358
HpaI	GTTAAC	1 cut(s)	55
HphI	GGTGA	4 cut(s)	184, 430, 437, 472
Hpy166II	GTNNAC	3 cut(s)	55, 62, 229
Hpy188I	TCNGA	2 cut(s)	107, 349
Hpy188III	TCNNGA	2 cut(s)	20, 371
Hpy8I	GTNNAC	3 cut(s)	55, 62, 229
HpyAV	CCTTC	2 cut(s)	169, 275
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	44, 242, 257, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	477
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	349, 477
Lsp1109I	GCAGC	2 cut(s)	28, 56
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	269, 305, 338
MaeIII	GTNAC	3 cut(s)	164, 418, 425
MalI	GATC	2 cut(s)	351, 479
MboI	GATC	2 cut(s)	349, 477
MboII	GAAGA	3 cut(s)	122, 128, 272
MfeI	CAATTG	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	370
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	6 cut(s)	23, 101, 201, 378, 430, 445
MluNI	TGGCCA	1 cut(s)	74
MnlI	CCTC	2 cut(s)	43, 163
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	2 cut(s)	54, 159
MslI	CAYNNNNRTG	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	2 cut(s)	47, 128
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	2 cut(s)	349, 477
NlaIII	CATG	1 cut(s)	146
NmuCI	GTSAC	3 cut(s)	164, 418, 425
PfeI	GAWTC	3 cut(s)	121, 301, 358
PkrI	GCNGC	2 cut(s)	43, 46
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspPI	GGNCC	2 cut(s)	131, 229
PstI	CTGCAG	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	278
PvuII	CAGCTG	2 cut(s)	47, 128
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	54, 159
SatI	GCNGC	2 cut(s)	42, 45
Sau3AI	GATC	2 cut(s)	349, 477
Sau96I	GGNCC	2 cut(s)	131, 229
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	9 cut(s)	49, 54, 130, 221, 270, 280, 367, 427, 477
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	369, 389
SmoI	CTYRAG	2 cut(s)	369, 389
Sse9I	AATT	6 cut(s)	23, 101, 201, 378, 430, 445
SspMI	CTAG	3 cut(s)	269, 305, 338
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	2 cut(s)	69, 75
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	252
TasI	AATT	6 cut(s)	23, 101, 201, 378, 430, 445
TfiI	GAWTC	3 cut(s)	121, 301, 358
Tru1I	TTAA	2 cut(s)	54, 159
Tru9I	TTAA	2 cut(s)	54, 159
TscAI	CASTG	2 cut(s)	64, 360
TseFI	GTSAC	3 cut(s)	164, 418, 425
TseI	GCWGC	2 cut(s)	41, 44
Tsp45I	GTSAC	3 cut(s)	164, 418, 425
TspDTI	ATGAA	4 cut(s)	17, 45, 129, 413
TspRI	CASTG	2 cut(s)	64, 360
VpaK11BI	GGWCC	1 cut(s)	229
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	3 cut(s)	23, 101, 445
XspI	CTAG	3 cut(s)	269, 305, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.