Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

29031790 .. 29033067

Gene Structure 1278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGCAAGAAGAGAAGAGATCAGCAAACACAGGTATGGAGGTGGCGAGGTCATCGGAATGTTTCCAAAGGGAGGACTTGGCTGTCGTCCCCAAGCCTGATGGTTATTGTGATCTGGAATTCCTTGGATTGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTACAATTGGGAAGCCACTGGTTGTTAACCCACGACTCATGAAAAATATAGTGCTTCGGGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTAATGGTCACGGGGTGAAGGCTATTGTTCAGGGCAGGGAAATAATTTTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAACGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAACTCAATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAACTGCAAATTCTATTGCCAATGTGGCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

233

Amino Acids

25.88

Weight (kDa)

9.1

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	74 - 220	6.7e-13	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	4 cut(s)	118, 224, 302, 646
AdeI	CACNNNGTG	1 cut(s)	373
AfiI	CCNNNNNNNGG	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	3 cut(s)	248, 420, 479
AluI	AGCT	3 cut(s)	248, 420, 479
Alw21I	GWGCWC	1 cut(s)	571
AlwI	GGATC	1 cut(s)	545
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	3 cut(s)	273, 279, 332
ApeKI	GCWGC	2 cut(s)	242, 245
ApoI	RAATTY	4 cut(s)	118, 224, 302, 646
AseI	ATTAAT	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	332, 430
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	4 cut(s)	385, 631, 638, 673
AvaII	GGWCC	1 cut(s)	430
BalI	TGGCCA	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	571
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	229, 257
BccI	CCATC	3 cut(s)	94, 418, 512
BceAI	ACGGC	1 cut(s)	500
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	564
BclI	TGATCA	1 cut(s)	678
BcnI	CCSGG	1 cut(s)	331
BfaI	CTAG	3 cut(s)	470, 506, 539
BfmI	CTRYAG	1 cut(s)	243
BglI	GCCNNNNNGGC	1 cut(s)	662
BisI	GCNGC	2 cut(s)	243, 246
BlsI	GCNGC	2 cut(s)	244, 247
Bme1390I	CCNGG	2 cut(s)	331, 564
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	332, 430
BmrFI	CCNGG	2 cut(s)	331, 564
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	445
BmuI	ACTGGG	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	331
BsaJI	CCNNGG	3 cut(s)	123, 270, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	186, 502
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	123, 270, 276
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	186, 502
BseXI	GCAGC	2 cut(s)	229, 257
BshFI	GGCC	3 cut(s)	275, 281, 334
BsiHKAI	GWGCWC	1 cut(s)	571
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	73, 173
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	73, 173
BsnI	GGCC	3 cut(s)	275, 281, 334
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	4 cut(s)	19, 111, 550, 678
BspANI	GGCC	3 cut(s)	275, 281, 334
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	186, 502
BssECI	CCNNGG	3 cut(s)	123, 270, 276
BssMI	GATC	4 cut(s)	19, 111, 550, 678
BssT1I	CCWWGG	3 cut(s)	123, 270, 276
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	3 cut(s)	5, 10, 312
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	4 cut(s)	22, 114, 553, 681
BstMBI	GATC	4 cut(s)	19, 111, 550, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 662
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	2 cut(s)	329, 562
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	229, 257
BstV2I	GAAGAC	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	275, 281, 334
BtsIMutI	CAGTG	3 cut(s)	179, 265, 554
Cac8I	GCNNGC	1 cut(s)	489
CaiI	CAGNNNCTG	1 cut(s)	479
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	332, 430
CsiI	ACCWGGT	1 cut(s)	562
CviAII	CATG	2 cut(s)	202, 344
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	4 cut(s)	21, 113, 552, 680
DpnII	GATC	4 cut(s)	19, 111, 550, 678
DraIII	CACNNNGTG	1 cut(s)	373
DrdI	GACNNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	3 cut(s)	5, 10, 312
EarI	CTCTTC	3 cut(s)	5, 10, 312
Eco130I	CCWWGG	3 cut(s)	123, 270, 276
Eco47I	GGWCC	1 cut(s)	430
EcoRI	GAATTC	2 cut(s)	118, 224
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	3 cut(s)	123, 270, 276
ErhI	CCWWGG	3 cut(s)	123, 270, 276
FaeI	CATG	2 cut(s)	205, 347
FaiI	YATR	9 cut(s)	37, 203, 212, 231, 294, 345, 515, 587, 614
FaqI	GGGAC	2 cut(s)	73, 173
FatI	CATG	2 cut(s)	201, 343
FbaI	TGATCA	1 cut(s)	678
Fnu4HI	GCNGC	2 cut(s)	243, 246
Fsp4HI	GCNGC	2 cut(s)	243, 246
FspBI	CTAG	3 cut(s)	470, 506, 539
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	243, 246
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	275, 281, 334
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	2 cut(s)	205, 347
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HincII	GTYRAC	2 cut(s)	190, 256
HindII	GTYRAC	2 cut(s)	190, 256
HinfI	GANTC	4 cut(s)	161, 198, 322, 502
HpaI	GTTAAC	2 cut(s)	190, 256
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	4 cut(s)	385, 631, 638, 673
Hpy166II	GTNNAC	5 cut(s)	134, 190, 256, 263, 430
Hpy188I	TCNGA	3 cut(s)	57, 308, 550
Hpy188III	TCNNGA	4 cut(s)	115, 202, 221, 572
Hpy8I	GTNNAC	5 cut(s)	134, 190, 256, 263, 430
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	5 cut(s)	139, 245, 443, 458, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 662
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	205, 347
HspAI	GCGC	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	678
KspAI	GTTAAC	2 cut(s)	190, 256
Kzo9I	GATC	4 cut(s)	19, 111, 550, 678
Lsp1109I	GCAGC	2 cut(s)	229, 257
LweI	GCATC	1 cut(s)	445
MabI	ACCWGGT	1 cut(s)	562
MaeI	CTAG	3 cut(s)	470, 506, 539
MaeIII	GTNAC	3 cut(s)	365, 619, 626
MalI	GATC	4 cut(s)	21, 113, 552, 680
MboI	GATC	4 cut(s)	19, 111, 550, 678
MboII	GAAGA	5 cut(s)	22, 27, 323, 329, 473
MfeI	CAATTG	2 cut(s)	168, 631
MhlI	GDGCHC	1 cut(s)	571
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	8 cut(s)	118, 168, 224, 302, 402, 579, 631, 646
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	155, 192
MnlI	CCTC	5 cut(s)	33, 41, 66, 244, 364
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	3 cut(s)	189, 255, 360
MslI	CAYNNNNRTG	3 cut(s)	34, 57, 617
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	331, 564
MunI	CAATTG	2 cut(s)	168, 631
MvaI	CCWGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	2 cut(s)	340, 662
NciI	CCSGG	1 cut(s)	331
NdeII	GATC	4 cut(s)	19, 111, 550, 678
NlaIII	CATG	2 cut(s)	205, 347
NmuCI	GTSAC	3 cut(s)	365, 619, 626
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	322, 502
PkrI	GCNGC	2 cut(s)	244, 247
PleI	GAGTC	2 cut(s)	155, 192
PpsI	GAGTC	2 cut(s)	155, 192
PshBI	ATTAAT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspPI	GGNCC	2 cut(s)	332, 430
PstI	CTGCAG	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	479
PvuII	CAGCTG	1 cut(s)	248
RseI	CAYNNNNRTG	3 cut(s)	34, 57, 617
SaqAI	TTAA	3 cut(s)	189, 255, 360
SatI	GCNGC	2 cut(s)	243, 246
Sau3AI	GATC	4 cut(s)	19, 111, 550, 678
Sau96I	GGNCC	2 cut(s)	332, 430
SchI	GAGTC	2 cut(s)	155, 192
ScrFI	CCNGG	2 cut(s)	331, 564
SduI	GDGCHC	1 cut(s)	571
SexAI	ACCWGGT	1 cut(s)	562
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	3 cut(s)	34, 57, 617
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	8 cut(s)	118, 168, 224, 302, 402, 579, 631, 646
SspMI	CTAG	3 cut(s)	470, 506, 539
StyD4I	CCNGG	2 cut(s)	329, 562
StyI	CCWWGG	3 cut(s)	123, 270, 276
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	2 cut(s)	148, 453
TasI	AATT	8 cut(s)	118, 168, 224, 302, 402, 579, 631, 646
TfiI	GAWTC	2 cut(s)	322, 502
Tru1I	TTAA	3 cut(s)	189, 255, 360
Tru9I	TTAA	3 cut(s)	189, 255, 360
TscAI	CASTG	3 cut(s)	186, 265, 561
TseFI	GTSAC	3 cut(s)	365, 619, 626
TseI	GCWGC	2 cut(s)	242, 245
Tsp45I	GTSAC	3 cut(s)	365, 619, 626
TspDTI	ATGAA	4 cut(s)	218, 246, 330, 614
TspRI	CASTG	3 cut(s)	186, 265, 561
VpaK11BI	GGWCC	1 cut(s)	430
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	4 cut(s)	118, 224, 302, 646
XspI	CTAG	3 cut(s)	470, 506, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.