Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

39310268 .. 39313440

Gene Structure 3173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0335000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCACGTGGATGTGGATGTTACGTGTGCCCGCTCCAAAAGCCCAAGCAGTTTGATACTCGGGGCACGGAAGAGACCGGCCCAGAAAGTAAAGTAAATCTCACAGGGACTCGGGACTGGCTCGTCTCTCGTCATTTTTCACTTTCTAACCACACAGACAAAAACGGAGAGGAAATTGTTGGTTTCTCCACCGACACAGACGGATCATTTGTTCGTCACAGAAAGATGAAGAGCCAAAGCAGTTATGCACCTCCGTCTTATATTCCCTTGGGCCAATCAGATTCGGGATCACCTGTTGTTTTACGCAATGAAGACCCTCCCAAGCAGCAAAATAATGTCGATGGGCCGATACAATGGTCTTCTGGAATTTGCGCATGTTGTGATGATACGCAGAGCTGTTGTATAGGTTTATTTTGTCCTTGCTATCTGTTCGGAAAGAATGCAGAGTTTCTGGGCTCTGGGACATTAATGGGCTCCTGCACGACTCATTTTATTCTGTGGGTACTTGTTAATACCGTCTGCTGCTTATTAACTGATGGCCTTATTTTTGGTATACCGGGATGCTTTGTTGCATGTTATGCTTGTGGCTACCGCAGGGCACTAAGATCAAAATATAATCTCCAGGAAGCACCATGTGGAGACTTTATTACTCATTTTTTCTGCCATCTGTGCGCAATTTGTCAAGAGTACAGGGAGATCCGTGAAAAGTCTGCTGAATCTGGCCCTGGTGATCTGAATCTAGCCATAGTTACAGCCCCAGCAGTCCAGACAATGGAACCAGGGCTTGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

264

Amino Acids

28.9

Weight (kDa)

5.87

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	119 - 232	2.5e-28	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
Acc16I	TGCGCA	2 cut(s)	373, 673
AccB7I	CCANNNNNTGG	1 cut(s)	772
AccBSI	CCGCTC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	553
AciI	CCGC	2 cut(s)	32, 592
AclWI	GGATC	3 cut(s)	211, 295, 691
AcsI	RAATTY	1 cut(s)	366
AcvI	CACGTG	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	504, 689
AfiI	CCNNNNNNNGG	1 cut(s)	772
AflIII	ACRYGT	1 cut(s)	24
AjnI	CCWGG	3 cut(s)	621, 724, 778
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
Alw26I	GTCTC	3 cut(s)	68, 130, 633
AlwI	GGATC	3 cut(s)	211, 295, 691
Ama87I	CYCGRG	2 cut(s)	60, 111
AoxI	GGCC	5 cut(s)	79, 271, 344, 538, 721
ApeKI	GCWGC	2 cut(s)	325, 522
ApoI	RAATTY	1 cut(s)	366
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AseI	ATTAAT	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	374, 674
AspS9I	GGNCC	4 cut(s)	80, 271, 344, 722
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	2 cut(s)	282, 740
AvaI	CYCGRG	2 cut(s)	60, 111
BaeGI	GKGCMC	3 cut(s)	32, 68, 601
BaeI	ACNNNNGTAYC	2 cut(s)	341, 374
BanII	GRGCYC	2 cut(s)	458, 476
BbrPI	CACGTG	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	318, 351
BbvI	GCAGC	2 cut(s)	337, 509
BccI	CCATC	3 cut(s)	335, 530, 672
BciT130I	CCWGG	3 cut(s)	623, 726, 780
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	3 cut(s)	68, 130, 633
BfaI	CTAG	1 cut(s)	740
BisI	GCNGC	2 cut(s)	326, 523
BlsI	GCNGC	2 cut(s)	327, 524
Bme1390I	CCNGG	4 cut(s)	558, 623, 726, 780
BmeT110I	CYCGRG	2 cut(s)	60, 111
BmgT120I	GGNCC	4 cut(s)	80, 271, 344, 722
BmiI	GGNNCC	2 cut(s)	475, 777
BmrFI	CCNGG	4 cut(s)	558, 623, 726, 780
BmsI	GCATC	1 cut(s)	551
BpiI	GAAGAC	2 cut(s)	318, 351
BpmI	CTGGAG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	558
BsaAI	YACGTR	2 cut(s)	8, 25
BsaBI	GATNNNNATC	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	267, 724, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	772
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	3 cut(s)	623, 726, 780
BseDI	CCNNGG	3 cut(s)	267, 724, 779
BseGI	GGATG	3 cut(s)	17, 23, 566
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	772
BseMI	GCAATG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	122
BseSI	GKGCMC	3 cut(s)	32, 68, 601
BseXI	GCAGC	2 cut(s)	337, 509
BseYI	CCCAGC	1 cut(s)	757
BsgI	GTGCAG	1 cut(s)	463
BshFI	GGCC	5 cut(s)	81, 273, 346, 540, 723
BsiHKCI	CYCGRG	2 cut(s)	60, 111
BsiSI	CCGG	2 cut(s)	78, 557
BslFI	GGGAC	3 cut(s)	121, 128, 475
BslI	CCNNNNNNNGG	1 cut(s)	772
BsmAI	GTCTC	3 cut(s)	68, 130, 633
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	3 cut(s)	121, 128, 475
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	5 cut(s)	81, 273, 346, 540, 723
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	2 cut(s)	60, 111
Bsp1286I	GDGCHC	5 cut(s)	32, 68, 458, 476, 601
Bsp143I	GATC	5 cut(s)	203, 287, 605, 696, 730
BspACI	CCGC	2 cut(s)	32, 592
BspANI	GGCC	5 cut(s)	81, 273, 346, 540, 723
BspLI	GGNNCC	2 cut(s)	475, 777
BspPI	GGATC	3 cut(s)	211, 295, 691
BspQI	GCTCTTC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	267, 724, 779
BssMI	GATC	5 cut(s)	203, 287, 605, 696, 730
BssNAI	GTATAC	1 cut(s)	554
BssT1I	CCWWGG	1 cut(s)	267
Bst1107I	GTATAC	1 cut(s)	554
Bst2UI	CCWGG	3 cut(s)	623, 726, 780
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	2 cut(s)	66, 224
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBAI	YACGTR	2 cut(s)	8, 25
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	17, 23, 566
BstHHI	GCGC	2 cut(s)	374, 674
BstKTI	GATC	5 cut(s)	206, 290, 608, 699, 733
BstMAI	GTCTC	3 cut(s)	68, 130, 633
BstMBI	GATC	5 cut(s)	203, 287, 605, 696, 730
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 578, 669
BstNI	CCWGG	3 cut(s)	623, 726, 780
BstNSI	RCATGY	2 cut(s)	378, 576
BstSCI	CCNGG	4 cut(s)	556, 621, 724, 778
BstSLI	GKGCMC	3 cut(s)	32, 68, 601
BstV1I	GCAGC	2 cut(s)	337, 509
BstV2I	GAAGAC	2 cut(s)	318, 351
BstX2I	RGATCY	1 cut(s)	696
BstYI	RGATCY	1 cut(s)	696
BstZ17I	GTATAC	1 cut(s)	554
BsuRI	GGCC	5 cut(s)	81, 273, 346, 540, 723
BtsCI	GGATG	3 cut(s)	17, 23, 566
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	2 cut(s)	374, 674
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	4 cut(s)	80, 271, 344, 722
Csp6I	GTAC	2 cut(s)	503, 688
CviAII	CATG	3 cut(s)	375, 573, 633
CviQI	GTAC	2 cut(s)	503, 688
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	5 cut(s)	205, 289, 607, 698, 732
DpnII	GATC	5 cut(s)	203, 287, 605, 696, 730
DraIII	CACNNNGTG	1 cut(s)	635
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	2 cut(s)	66, 224
EarI	CTCTTC	2 cut(s)	66, 224
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	2 cut(s)	458, 476
Eco31I	GGTCTC	1 cut(s)	68
Eco72I	CACGTG	1 cut(s)	8
Eco88I	CYCGRG	2 cut(s)	60, 111
EcoRII	CCWGG	3 cut(s)	621, 724, 778
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	458, 476
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	3 cut(s)	378, 576, 636
FaqI	GGGAC	3 cut(s)	121, 128, 475
FatI	CATG	3 cut(s)	374, 572, 632
FauI	CCCGC	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	326, 523
FokI	GGATG	3 cut(s)	24, 30, 573
FriOI	GRGCYC	2 cut(s)	458, 476
Fsp4HI	GCNGC	2 cut(s)	326, 523
FspBI	CTAG	1 cut(s)	740
FspI	TGCGCA	2 cut(s)	373, 673
GlaI	GCGC	2 cut(s)	373, 673
GluI	GCNGC	2 cut(s)	326, 523
GsaI	CCCAGC	1 cut(s)	761
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	5 cut(s)	81, 273, 346, 540, 723
HapII	CCGG	2 cut(s)	78, 557
HhaI	GCGC	2 cut(s)	374, 674
Hin1II	CATG	3 cut(s)	378, 576, 636
Hin6I	GCGC	2 cut(s)	372, 672
HinP1I	GCGC	2 cut(s)	372, 672
HinfI	GANTC	5 cut(s)	109, 281, 484, 716, 736
HpaII	CCGG	2 cut(s)	78, 557
HphI	GGTGA	2 cut(s)	282, 740
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	3 cut(s)	280, 434, 735
Hpy188III	TCNNGA	5 cut(s)	113, 285, 363, 683, 766
Hpy8I	GTNNAC	1 cut(s)	554
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	7, 24
HpyCH4V	TGCA	4 cut(s)	248, 443, 480, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 578, 669
HpyF3I	CTNAG	1 cut(s)	602
HpySE526I	ACGT	2 cut(s)	7, 24
Hsp92II	CATG	3 cut(s)	378, 576, 636
HspAI	GCGC	2 cut(s)	372, 672
Kzo9I	GATC	5 cut(s)	203, 287, 605, 696, 730
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	2 cut(s)	39, 479
Lsp1109I	GCAGC	2 cut(s)	337, 509
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	2 cut(s)	7, 24
MaeIII	GTNAC	3 cut(s)	20, 215, 748
MalI	GATC	5 cut(s)	205, 289, 607, 698, 732
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	5 cut(s)	203, 287, 605, 696, 730
MboII	GAAGA	4 cut(s)	83, 241, 323, 351
MflI	RGATCY	1 cut(s)	696
MhlI	GDGCHC	5 cut(s)	32, 68, 458, 476, 601
MluCI	AATT	3 cut(s)	174, 366, 675
MlyI	GAGTC	2 cut(s)	103, 478
MnlI	CCTC	3 cut(s)	163, 261, 327
MseI	TTAA	3 cut(s)	467, 510, 530
MslI	CAYNNNNRTG	1 cut(s)	10
MspI	CCGG	2 cut(s)	78, 557
MspR9I	CCNGG	4 cut(s)	558, 623, 726, 780
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	3 cut(s)	623, 726, 780
MwoI	GCNNNNNNNGC	3 cut(s)	40, 578, 669
NciI	CCSGG	1 cut(s)	558
NdeII	GATC	5 cut(s)	203, 287, 605, 696, 730
NlaIII	CATG	3 cut(s)	378, 576, 636
NlaIV	GGNNCC	2 cut(s)	475, 777
NmuCI	GTSAC	1 cut(s)	215
NsbI	TGCGCA	2 cut(s)	373, 673
NspI	RCATGY	2 cut(s)	378, 576
PciSI	GCTCTTC	1 cut(s)	224
PctI	GAATGC	1 cut(s)	445
PfeI	GAWTC	3 cut(s)	281, 716, 736
PflMI	CCANNNNNTGG	1 cut(s)	772
PfoI	TCCNGGA	1 cut(s)	621
PkrI	GCNGC	2 cut(s)	327, 524
PleI	GAGTC	2 cut(s)	103, 478
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	103, 478
Ppu21I	YACGTR	2 cut(s)	8, 25
PshBI	ATTAAT	1 cut(s)	467
Psp6I	CCWGG	3 cut(s)	621, 724, 778
PspCI	CACGTG	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	757
PspGI	CCWGG	3 cut(s)	621, 724, 778
PspN4I	GGNNCC	2 cut(s)	475, 777
PspPI	GGNCC	4 cut(s)	80, 271, 344, 722
PsuI	RGATCY	1 cut(s)	696
RsaI	GTAC	2 cut(s)	504, 689
RsaNI	GTAC	2 cut(s)	503, 688
RseI	CAYNNNNRTG	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	467, 510, 530
SatI	GCNGC	2 cut(s)	326, 523
Sau3AI	GATC	5 cut(s)	203, 287, 605, 696, 730
Sau96I	GGNCC	4 cut(s)	80, 271, 344, 722
SchI	GAGTC	2 cut(s)	103, 478
ScrFI	CCNGG	4 cut(s)	558, 623, 726, 780
SduI	GDGCHC	5 cut(s)	32, 68, 458, 476, 601
SetI	ASST	6 cut(s)	10, 27, 253, 295, 398, 409
SfaNI	GCATC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	174, 366, 675
SsiI	CCGC	2 cut(s)	32, 592
SspMI	CTAG	1 cut(s)	740
StyD4I	CCNGG	4 cut(s)	556, 621, 724, 778
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	10, 27
TaqI	TCGA	1 cut(s)	339
TasI	AATT	3 cut(s)	174, 366, 675
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	3 cut(s)	281, 716, 736
Tru1I	TTAA	3 cut(s)	467, 510, 530
Tru9I	TTAA	3 cut(s)	467, 510, 530
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	325, 522
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	242, 324
TspGWI	ACGGA	5 cut(s)	83, 180, 216, 243, 689
Van91I	CCANNNNNTGG	1 cut(s)	772
VspI	ATTAAT	1 cut(s)	467
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	2 cut(s)	378, 576
XmiI	GTMKAC	1 cut(s)	553
XspI	CTAG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.