Rh3BG289600

Copper-transporting ATPase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
29026713 .. 29029356
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG289600.1

Sequence Viewer

Length: 1092 bp
ATGAATTTCCTACCGCCGCGACTTGGAGTCTGGAGACTTGGACTCTTGGAGCACAGAGGCGCAGAGCAGTCCGACTCAGCGACCCGGCGATCTGCAAAAGTGCAAGGCTGGAAGCCTGGAACCAGCAACCCATCTCCGGTCTCCGAGCTCCCCACCGCCACCAGCAACCCGTCTGGGCCGTCTGGCTGTCTCCGTGGTTCTTGCATTGCTGAAAGTCAAGACACTGGGTCTTCGGCAACCTCATCAAGATTTGCAGTTGGCCAGTTGTCTACTTATCTGGCCTCAGGCCTGCAATTTCAATATCATCAACAGGCACATAAGGTGGATTGCATTGTGTTCGACAAGACAGGGACTCTTACAATTGGGAAGCCACTGGTTGTTAACACACGACTCATGAAAAATATAGTGCTTCGAGAATTCTGTGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTACTGGTCACGGGGTGAAGGCTATTGTTCAGGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAATTGCAAATTCTATTGCCAATGAAGTTGGTATTGATACTGTTATAGCCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGTGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGATATTAATTTCTGATGGAAATGACATTTAG

Protein Analysis

363

Amino Acids

38.25

Weight (kDa)

4.98

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 108 - 332 7.5e-33 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 269
AccII CGCG 1 cut(s) 19
AciI CCGC 4 cut(s) 14, 17, 156, 989
AclWI GGATC 1 cut(s) 737
AcoI YGGCCR 2 cut(s) 259, 465
AcsI RAATTY 4 cut(s) 4, 416, 494, 838
AcuI CTGAAG 2 cut(s) 693, 915
AdeI CACNNNGTG 1 cut(s) 565
AfiI CCNNNNNNNGG 2 cut(s) 23, 136
AgsI TTSAA 1 cut(s) 299
AhdI GACNNNNNGTC 2 cut(s) 26, 226
AjnI CCWGG 2 cut(s) 115, 754
AleI CACNNNNGTG 1 cut(s) 944
AluBI AGCT 4 cut(s) 148, 440, 612, 671
AluI AGCT 4 cut(s) 148, 440, 612, 671
Alw21I GWGCWC 3 cut(s) 54, 150, 763
Alw26I GTCTC 3 cut(s) 28, 145, 194
AlwI GGATC 1 cut(s) 737
AlwNI CAGNNNCTG 1 cut(s) 671
AoxI GGCC 7 cut(s) 176, 259, 279, 286, 465, 471, 524
ApeKI GCWGC 3 cut(s) 434, 437, 1040
ApoI RAATTY 4 cut(s) 4, 416, 494, 838
AseI ATTAAT 1 cut(s) 1067
AspLEI GCGC 2 cut(s) 62, 535
AspS9I GGNCC 3 cut(s) 176, 524, 622
AsuC2I CCSGG 2 cut(s) 85, 523
AsuHPI GGTGA 6 cut(s) 577, 823, 830, 887, 958, 966
AvaII GGWCC 1 cut(s) 622
AxyI CCTNAGG 1 cut(s) 283
BalI TGGCCA 2 cut(s) 261, 467
BanII GRGCYC 1 cut(s) 150
BbsI GAAGAC 2 cut(s) 222, 660
Bbv12I GWGCWC 3 cut(s) 54, 150, 763
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 421, 449, 1052
BccI CCATC 6 cut(s) 139, 610, 704, 943, 953, 1070
BceAI ACGGC 1 cut(s) 163
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BciT130I CCWGG 2 cut(s) 117, 756
BclI TGATCA 1 cut(s) 892
BcnI CCSGG 2 cut(s) 85, 523
BcoDI GTCTC 3 cut(s) 28, 145, 194
BfaI CTAG 3 cut(s) 662, 698, 731
BfmI CTRYAG 1 cut(s) 435
BisI GCNGC 5 cut(s) 17, 435, 438, 990, 1041
BlsI GCNGC 5 cut(s) 18, 436, 439, 991, 1042
Bme1390I CCNGG 4 cut(s) 85, 117, 523, 756
Bme18I GGWCC 1 cut(s) 622
BmeRI GACNNNNNGTC 2 cut(s) 26, 226
BmgT120I GGNCC 3 cut(s) 176, 524, 622
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 4 cut(s) 85, 117, 523, 756
BmrI ACTGGG 2 cut(s) 234, 699
BmsI GCATC 2 cut(s) 637, 972
BmuI ACTGGG 2 cut(s) 234, 699
BpiI GAAGAC 2 cut(s) 222, 660
BpmI CTGGAG 2 cut(s) 52, 744
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 2 cut(s) 747, 767
BpuMI CCSGG 2 cut(s) 85, 523
BsaI GGTCTC 1 cut(s) 145
BsaJI CCNNGG 3 cut(s) 193, 462, 468
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 136
Bse1I ACTGG 5 cut(s) 229, 262, 378, 559, 694
Bse21I CCTNAGG 1 cut(s) 283
Bse3DI GCAATG 3 cut(s) 204, 630, 1026
BseBI CCWGG 2 cut(s) 117, 756
BseDI CCNNGG 3 cut(s) 193, 462, 468
BseLI CCNNNNNNNGG 2 cut(s) 23, 136
BseMI GCAATG 3 cut(s) 204, 630, 1026
BseMII CTCAG 3 cut(s) 90, 297, 432
BseNI ACTGG 5 cut(s) 229, 262, 378, 559, 694
BseXI GCAGC 3 cut(s) 421, 449, 1052
Bsh1236I CGCG 1 cut(s) 19
BshFI GGCC 7 cut(s) 178, 261, 281, 288, 467, 473, 526
BsiHKAI GWGCWC 3 cut(s) 54, 150, 763
BsiSI CCGG 3 cut(s) 85, 137, 522
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 2 cut(s) 23, 136
BsmAI GTCTC 3 cut(s) 28, 145, 194
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 7 cut(s) 178, 261, 281, 288, 467, 473, 526
Bso31I GGTCTC 1 cut(s) 145
Bsp1286I GDGCHC 3 cut(s) 54, 150, 763
Bsp143I GATC 3 cut(s) 89, 742, 892
BspACI CCGC 4 cut(s) 14, 17, 156, 989
BspANI GGCC 7 cut(s) 178, 261, 281, 288, 467, 473, 526
BspCNI CTCAG 3 cut(s) 89, 296, 433
BspFNI CGCG 1 cut(s) 19
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 121
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 145
BsrDI GCAATG 3 cut(s) 204, 630, 1026
BsrI ACTGG 5 cut(s) 229, 262, 378, 559, 694
BssECI CCNNGG 3 cut(s) 193, 462, 468
BssMI GATC 3 cut(s) 89, 742, 892
BssT1I CCWWGG 2 cut(s) 462, 468
Bst2UI CCWGG 2 cut(s) 117, 756
Bst4CI ACNGT 3 cut(s) 452, 871, 943
Bst6I CTCTTC 1 cut(s) 504
BstAPI GCANNNNNTGC 1 cut(s) 1013
BstC8I GCNNGC 4 cut(s) 290, 681, 927, 1018
BstDEI CTNAG 3 cut(s) 76, 283, 441
BstDSI CCRYGG 1 cut(s) 193
BstFNI CGCG 1 cut(s) 19
BstHHI GCGC 2 cut(s) 62, 535
BstKTI GATC 3 cut(s) 92, 745, 895
BstMAI GTCTC 3 cut(s) 28, 145, 194
BstMBI GATC 3 cut(s) 89, 742, 892
BstMWI GCNNNNNNNGC 4 cut(s) 532, 986, 1013, 1037
BstNI CCWGG 2 cut(s) 117, 756
BstSCI CCNGG 4 cut(s) 83, 115, 521, 754
BstSFI CTRYAG 1 cut(s) 435
BstUI CGCG 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 421, 449, 1052
BstV2I GAAGAC 2 cut(s) 222, 660
Bsu36I CCTNAGG 1 cut(s) 283
BsuRI GGCC 7 cut(s) 178, 261, 281, 288, 467, 473, 526
BtgI CCRYGG 1 cut(s) 193
BtsIMutI CAGTG 5 cut(s) 222, 371, 457, 746, 939
Cac8I GCNNGC 4 cut(s) 290, 681, 927, 1018
CaiI CAGNNNCTG 1 cut(s) 671
CciI TCATGA 1 cut(s) 393
CfoI GCGC 2 cut(s) 62, 535
Cfr13I GGNCC 3 cut(s) 176, 524, 622
CsiI ACCWGGT 1 cut(s) 754
CviAII CATG 2 cut(s) 394, 536
DdeI CTNAG 3 cut(s) 76, 283, 441
DpnI GATC 3 cut(s) 91, 744, 894
DpnII GATC 3 cut(s) 89, 742, 892
DraIII CACNNNGTG 1 cut(s) 565
DriI GACNNNNNGTC 2 cut(s) 26, 226
EaeI YGGCCR 2 cut(s) 259, 465
Eam1104I CTCTTC 1 cut(s) 504
Eam1105I GACNNNNNGTC 2 cut(s) 26, 226
EarI CTCTTC 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 462, 468
Eco147I AGGCCT 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 622
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 693, 915
Eco81I CCTNAGG 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 115, 754
EcoT14I CCWWGG 2 cut(s) 462, 468
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 2 cut(s) 462, 468
FaeI CATG 2 cut(s) 397, 539
FaiI YATR 9 cut(s) 318, 395, 404, 486, 537, 707, 779, 806, 875
FaqI GGGAC 1 cut(s) 364
FatI CATG 2 cut(s) 393, 535
FbaI TGATCA 1 cut(s) 892
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 5 cut(s) 17, 435, 438, 990, 1041
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 5 cut(s) 17, 435, 438, 990, 1041
FspBI CTAG 3 cut(s) 662, 698, 731
GlaI GCGC 2 cut(s) 61, 534
GluI GCNGC 5 cut(s) 17, 435, 438, 990, 1041
GsuI CTGGAG 2 cut(s) 52, 744
HaeIII GGCC 7 cut(s) 178, 261, 281, 288, 467, 473, 526
HapII CCGG 3 cut(s) 85, 137, 522
HhaI GCGC 2 cut(s) 62, 535
Hin1II CATG 2 cut(s) 397, 539
Hin6I GCGC 2 cut(s) 60, 533
HinP1I GCGC 2 cut(s) 60, 533
HincII GTYRAC 2 cut(s) 382, 448
HindII GTYRAC 2 cut(s) 382, 448
HinfI GANTC 8 cut(s) 27, 42, 74, 352, 390, 514, 694, 971
HpaI GTTAAC 2 cut(s) 382, 448
HpaII CCGG 3 cut(s) 85, 137, 522
HphI GGTGA 6 cut(s) 577, 823, 830, 887, 958, 966
Hpy166II GTNNAC 6 cut(s) 270, 382, 425, 448, 455, 622
Hpy188I TCNGA 5 cut(s) 73, 145, 500, 742, 1075
Hpy188III TCNNGA 6 cut(s) 31, 218, 246, 394, 413, 764
Hpy8I GTNNAC 6 cut(s) 270, 382, 425, 448, 455, 622
HpyAV CCTTC 3 cut(s) 562, 668, 910
HpyCH4III ACNGT 3 cut(s) 452, 871, 943
HpyF10VI GCNNNNNNNGC 4 cut(s) 532, 986, 1013, 1037
HpyF3I CTNAG 3 cut(s) 76, 283, 441
Hsp92II CATG 2 cut(s) 397, 539
HspAI GCGC 2 cut(s) 60, 533
Ksp22I TGATCA 1 cut(s) 892
KspAI GTTAAC 2 cut(s) 382, 448
Kzo9I GATC 3 cut(s) 89, 742, 892
LmnI GCTCC 2 cut(s) 49, 153
Lsp1109I GCAGC 3 cut(s) 421, 449, 1052
LweI GCATC 2 cut(s) 637, 972
MabI ACCWGGT 1 cut(s) 754
MaeI CTAG 3 cut(s) 662, 698, 731
MaeIII GTNAC 3 cut(s) 557, 811, 818
MalI GATC 3 cut(s) 91, 744, 894
MboI GATC 3 cut(s) 89, 742, 892
MboII GAAGA 5 cut(s) 222, 515, 521, 665, 1072
MfeI CAATTG 4 cut(s) 360, 823, 1008, 1032
MhlI GDGCHC 3 cut(s) 54, 150, 763
MlsI TGGCCA 2 cut(s) 261, 467
MluNI TGGCCA 2 cut(s) 261, 467
MlyI GAGTC 6 cut(s) 36, 36, 68, 346, 384, 965
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 6 cut(s) 50, 250, 292, 436, 556, 1030
Mox20I TGGCCA 2 cut(s) 261, 467
MscI TGGCCA 2 cut(s) 261, 467
MseI TTAA 3 cut(s) 381, 447, 1067
MslI CAYNNNNRTG 2 cut(s) 809, 944
Msp20I TGGCCA 2 cut(s) 261, 467
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 3 cut(s) 85, 137, 522
MspR9I CCNGG 4 cut(s) 85, 117, 523, 756
MunI CAATTG 4 cut(s) 360, 823, 1008, 1032
MvaI CCWGG 2 cut(s) 117, 756
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 4 cut(s) 532, 986, 1013, 1037
NciI CCSGG 2 cut(s) 85, 523
NdeII GATC 3 cut(s) 89, 742, 892
NlaIII CATG 2 cut(s) 397, 539
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 557, 811, 818
OliI CACNNNNGTG 1 cut(s) 944
PagI TCATGA 1 cut(s) 393
PceI AGGCCT 1 cut(s) 288
PfeI GAWTC 2 cut(s) 514, 694
PkrI GCNGC 5 cut(s) 18, 436, 439, 991, 1042
PleI GAGTC 6 cut(s) 35, 36, 68, 346, 384, 965
PpsI GAGTC 6 cut(s) 35, 36, 68, 346, 384, 965
PshBI ATTAAT 1 cut(s) 1067
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 115, 754
PspGI CCWGG 2 cut(s) 115, 754
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 3 cut(s) 176, 524, 622
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 671
PvuII CAGCTG 1 cut(s) 440
RseI CAYNNNNRTG 2 cut(s) 809, 944
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 3 cut(s) 381, 447, 1067
SatI GCNGC 5 cut(s) 17, 435, 438, 990, 1041
Sau3AI GATC 3 cut(s) 89, 742, 892
Sau96I GGNCC 3 cut(s) 176, 524, 622
SchI GAGTC 6 cut(s) 36, 36, 68, 346, 384, 965
ScrFI CCNGG 4 cut(s) 85, 117, 523, 756
SduI GDGCHC 3 cut(s) 54, 150, 763
SexAI ACCWGGT 1 cut(s) 754
SfaNI GCATC 2 cut(s) 637, 972
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 622
SmiMI CAYNNNNRTG 2 cut(s) 809, 944
SmlI CTYRAG 2 cut(s) 762, 782
SmoI CTYRAG 2 cut(s) 762, 782
SseBI AGGCCT 1 cut(s) 288
SsiI CCGC 4 cut(s) 14, 17, 156, 989
SspMI CTAG 3 cut(s) 662, 698, 731
SstI GAGCTC 1 cut(s) 150
StuI AGGCCT 1 cut(s) 288
StyD4I CCNGG 4 cut(s) 83, 115, 521, 754
StyI CCWWGG 2 cut(s) 462, 468
TaaI ACNGT 3 cut(s) 452, 871, 943
TaqI TCGA 3 cut(s) 339, 412, 645
TauI GCSGC 2 cut(s) 19, 992
TfiI GAWTC 2 cut(s) 514, 694
Tru1I TTAA 3 cut(s) 381, 447, 1067
Tru9I TTAA 3 cut(s) 381, 447, 1067
TscAI CASTG 5 cut(s) 229, 378, 457, 753, 946
TseFI GTSAC 3 cut(s) 557, 811, 818
TseI GCWGC 3 cut(s) 434, 437, 1040
Tsp45I GTSAC 3 cut(s) 557, 811, 818
TspDTI ATGAA 6 cut(s) 17, 410, 522, 806, 867, 1073
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 5 cut(s) 229, 378, 457, 753, 946
VpaK11BI GGWCC 1 cut(s) 622
VspI ATTAAT 1 cut(s) 1067
XapI RAATTY 4 cut(s) 4, 416, 494, 838
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 3 cut(s) 662, 698, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.