Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

24927876 .. 24928413

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1182600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTGTGTGTTGGTTTCCATTGATGGAAAGATTGCTGGGTCTTTTGCTGTAACTGATCCAGTGAAGCTAGAGGCTGCACGAGTCATCTCTTATCTTCACTCGATAAACATTACAAGCATCATGGTTACTGGTGATAACTGGGCTACAGCGGCAGCCAGAGTGATGGAGGTTGGCATTGATAAGCTGTATGCTGAGACGGATCCACTAGGAAAAGCTGATAGAATCAAAGAATTACAGTTACGATTATATTATAGTTACAGGGGTGGTGTGAGTGGATTACAATTACCCAGCTCCACAAGTAATTTTGTTCGGGTTTTGAACGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

110

Amino Acids

11.81

Weight (kDa)

6.56

Isoelectric Point (pI)

14.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	8 - 80	3.7e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	3 cut(s)	50, 194, 207
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	4 cut(s)	67, 184, 215, 291
AluI	AGCT	4 cut(s)	67, 184, 215, 291
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	3 cut(s)	50, 194, 207
ApeKI	GCWGC	2 cut(s)	74, 152
AsuHPI	GGTGA	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	61, 164
BccI	CCATC	2 cut(s)	17, 157
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	68, 206
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	3 cut(s)	75, 150, 153
BlsI	GCNGC	3 cut(s)	76, 151, 154
BmiI	GGNNCC	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	59, 133, 143
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	3 cut(s)	59, 133, 143
BseXI	GCAGC	2 cut(s)	61, 164
BseYI	CCCAGC	2 cut(s)	35, 287
BsgI	GTGCAG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	55, 199
BspACI	CCGC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	3 cut(s)	50, 194, 207
BsrI	ACTGG	3 cut(s)	59, 133, 143
BssMI	GATC	2 cut(s)	55, 199
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	58, 202
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	55, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	61, 164
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	66
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	7 cut(s)	67, 74, 143, 155, 184, 215, 291
CviKI_1	RGCY	7 cut(s)	67, 74, 143, 155, 184, 215, 291
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	57, 201
DpnII	GATC	2 cut(s)	55, 199
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	1 cut(s)	124
FaiI	YATR	4 cut(s)	122, 189, 247, 252
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	75, 150, 153
Fsp4HI	GCNGC	3 cut(s)	75, 150, 153
FspBI	CTAG	2 cut(s)	68, 206
GluI	GCNGC	3 cut(s)	75, 150, 153
GsaI	CCCAGC	2 cut(s)	39, 291
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	2 cut(s)	81, 222
HphI	GGTGA	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	55, 199
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	7 cut(s)	21, 72, 114, 124, 169, 244, 301
Lsp1109I	GCAGC	2 cut(s)	61, 164
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	2 cut(s)	68, 206
MaeIII	GTNAC	4 cut(s)	49, 124, 237, 254
MalI	GATC	2 cut(s)	57, 201
MboI	GATC	2 cut(s)	55, 199
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	3 cut(s)	230, 281, 301
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	2 cut(s)	64, 160
MspA1I	CMGCKG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	2 cut(s)	55, 199
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	76, 151, 154
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PspFI	CCCAGC	2 cut(s)	35, 287
PspN4I	GGNNCC	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	199
SatI	GCNGC	3 cut(s)	75, 150, 153
Sau3AI	GATC	2 cut(s)	55, 199
SchI	GAGTC	1 cut(s)	90
SetI	ASST	5 cut(s)	69, 171, 186, 217, 293
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	144
Sse9I	AATT	3 cut(s)	230, 281, 301
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	2 cut(s)	68, 206
TaaI	ACNGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	101
TasI	AATT	3 cut(s)	230, 281, 301
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	222
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	2 cut(s)	74, 152
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	66
XspI	CTAG	2 cut(s)	68, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.