Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

34990855 .. 34992400

Gene Structure 1546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGATCAGCAAACACAGGTATGGAGGTGGCGAGGTCATCGGAATGTTTCCAAAGGGAGGACCTGGCCGTCGTCCCCAAGCTTGATGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTACAATTGGGAAGCCACTGGTTGTTAACCCACGACTCATGAAAAATATAGTGCTTCGGGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAATATGAAGAGAATCCAGTCTGGCCAGAAGCGCATGACTTTGCCTCCATTAATGGTCACAGGGTGAAGGCTATTGTTCAGGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAACTGCAAATTCTATTGCCAATGTGGCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGCTTCAGGCTACACTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGTTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

271

Amino Acids

29.37

Weight (kDa)

5.51

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	60 - 241	5.4e-16	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AciI	CCGC	1 cut(s)	716
AclWI	GGATC	1 cut(s)	503
AcoI	YGGCCR	3 cut(s)	66, 231, 290
AcsI	RAATTY	3 cut(s)	182, 260, 604
AcuI	CTGAAG	2 cut(s)	459, 644
AdeI	CACNNNGTG	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	63, 520
AluBI	AGCT	5 cut(s)	82, 206, 378, 437, 658
AluI	AGCT	5 cut(s)	82, 206, 378, 437, 658
Alw21I	GWGCWC	1 cut(s)	529
AlwI	GGATC	1 cut(s)	503
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	4 cut(s)	66, 231, 237, 290
ApeKI	GCWGC	3 cut(s)	200, 203, 767
ApoI	RAATTY	3 cut(s)	182, 260, 604
AseI	ATTAAT	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	61, 388
AsuHPI	GGTGA	5 cut(s)	343, 589, 596, 631, 693
AvaII	GGWCC	2 cut(s)	61, 388
BalI	TGGCCA	2 cut(s)	233, 292
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	529
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	187, 215, 779
BccI	CCATC	5 cut(s)	80, 376, 470, 670, 680
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	2 cut(s)	65, 522
BclI	TGATCA	1 cut(s)	636
BfaI	CTAG	3 cut(s)	428, 464, 497
BfmI	CTRYAG	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	620
BisI	GCNGC	4 cut(s)	201, 204, 717, 768
BlsI	GCNGC	4 cut(s)	202, 205, 718, 769
Bme1390I	CCNGG	2 cut(s)	65, 522
Bme18I	GGWCC	2 cut(s)	61, 388
BmgT120I	GGNCC	2 cut(s)	61, 388
BmrFI	CCNGG	2 cut(s)	65, 522
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	2 cut(s)	403, 699
BmuI	ACTGGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	513, 533
BsaJI	CCNNGG	2 cut(s)	228, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	4 cut(s)	144, 284, 460, 675
Bse3DI	GCAATG	2 cut(s)	396, 753
BseBI	CCWGG	2 cut(s)	65, 522
BseDI	CCNNGG	2 cut(s)	228, 234
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	2 cut(s)	396, 753
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	4 cut(s)	144, 284, 460, 675
BseXI	GCAGC	3 cut(s)	187, 215, 779
BshFI	GGCC	4 cut(s)	68, 233, 239, 292
BsiHKAI	GWGCWC	1 cut(s)	529
BslFI	GGGAC	2 cut(s)	59, 131
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	59, 131
BsnI	GGCC	4 cut(s)	68, 233, 239, 292
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	3 cut(s)	5, 508, 636
BspACI	CCGC	1 cut(s)	716
BspANI	GGCC	4 cut(s)	68, 233, 239, 292
BspCNI	CTCAG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	503
BsrDI	GCAATG	2 cut(s)	396, 753
BsrI	ACTGG	4 cut(s)	144, 284, 460, 675
BssECI	CCNNGG	2 cut(s)	228, 234
BssMI	GATC	3 cut(s)	5, 508, 636
BssT1I	CCWWGG	2 cut(s)	228, 234
Bst2UI	CCWGG	2 cut(s)	65, 522
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	2 cut(s)	270, 782
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	3 cut(s)	8, 511, 639
BstMBI	GATC	3 cut(s)	5, 508, 636
BstMWI	GCNNNNNNNGC	6 cut(s)	298, 620, 655, 671, 713, 764
BstNI	CCWGG	2 cut(s)	65, 522
BstSCI	CCNGG	2 cut(s)	63, 520
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	187, 215, 779
BstV2I	GAAGAC	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	68, 233, 239, 292
BtgZI	GCGATG	1 cut(s)	689
BtsIMutI	CAGTG	4 cut(s)	137, 223, 512, 668
Cac8I	GCNNGC	1 cut(s)	447
CaiI	CAGNNNCTG	1 cut(s)	437
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	61, 388
CsiI	ACCWGGT	1 cut(s)	520
CviAII	CATG	2 cut(s)	160, 302
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	3 cut(s)	7, 510, 638
DpnII	GATC	3 cut(s)	5, 508, 636
DraIII	CACNNNGTG	1 cut(s)	331
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	3 cut(s)	66, 231, 290
Eam1104I	CTCTTC	2 cut(s)	270, 782
EarI	CTCTTC	2 cut(s)	270, 782
Eco130I	CCWWGG	2 cut(s)	228, 234
Eco47I	GGWCC	2 cut(s)	61, 388
Eco57I	CTGAAG	2 cut(s)	459, 644
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	63, 520
EcoT14I	CCWWGG	2 cut(s)	228, 234
ErhI	CCWWGG	2 cut(s)	228, 234
FaeI	CATG	2 cut(s)	163, 305
FaqI	GGGAC	2 cut(s)	59, 131
FatI	CATG	2 cut(s)	159, 301
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	4 cut(s)	201, 204, 717, 768
Fsp4HI	GCNGC	4 cut(s)	201, 204, 717, 768
FspBI	CTAG	3 cut(s)	428, 464, 497
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	4 cut(s)	201, 204, 717, 768
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	4 cut(s)	68, 233, 239, 292
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	163, 305
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	2 cut(s)	148, 214
HindII	GTYRAC	2 cut(s)	148, 214
HindIII	AAGCTT	2 cut(s)	80, 656
HinfI	GANTC	5 cut(s)	119, 156, 280, 460, 698
HpaI	GTTAAC	2 cut(s)	148, 214
HphI	GGTGA	5 cut(s)	343, 589, 596, 631, 693
Hpy166II	GTNNAC	5 cut(s)	92, 148, 214, 221, 388
Hpy188I	TCNGA	3 cut(s)	43, 266, 508
Hpy188III	TCNNGA	3 cut(s)	160, 179, 530
Hpy8I	GTNNAC	5 cut(s)	92, 148, 214, 221, 388
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	328, 434
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	6 cut(s)	97, 203, 401, 416, 602, 758
HpyF10VI	GCNNNNNNNGC	6 cut(s)	298, 620, 655, 671, 713, 764
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	163, 305
HspAI	GCGC	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	636
KspAI	GTTAAC	2 cut(s)	148, 214
Kzo9I	GATC	3 cut(s)	5, 508, 636
Lsp1109I	GCAGC	3 cut(s)	187, 215, 779
LweI	GCATC	2 cut(s)	403, 699
MabI	ACCWGGT	1 cut(s)	520
MaeI	CTAG	3 cut(s)	428, 464, 497
MaeIII	GTNAC	3 cut(s)	323, 577, 584
MalI	GATC	3 cut(s)	7, 510, 638
MboI	GATC	3 cut(s)	5, 508, 636
MboII	GAAGA	3 cut(s)	287, 431, 799
MfeI	CAATTG	4 cut(s)	126, 589, 735, 759
MhlI	GDGCHC	1 cut(s)	529
MlsI	TGGCCA	2 cut(s)	233, 292
MluCI	AATT	9 cut(s)	126, 182, 260, 360, 537, 589, 604, 735, 759
MluNI	TGGCCA	2 cut(s)	233, 292
MlyI	GAGTC	3 cut(s)	113, 150, 692
MnlI	CCTC	7 cut(s)	19, 27, 52, 202, 322, 757, 810
Mox20I	TGGCCA	2 cut(s)	233, 292
MscI	TGGCCA	2 cut(s)	233, 292
MseI	TTAA	3 cut(s)	147, 213, 318
MslI	CAYNNNNRTG	3 cut(s)	20, 43, 575
Msp20I	TGGCCA	2 cut(s)	233, 292
MspA1I	CMGCKG	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	65, 522
MunI	CAATTG	4 cut(s)	126, 589, 735, 759
MvaI	CCWGG	2 cut(s)	65, 522
MwoI	GCNNNNNNNGC	6 cut(s)	298, 620, 655, 671, 713, 764
NdeII	GATC	3 cut(s)	5, 508, 636
NlaIII	CATG	2 cut(s)	163, 305
NmuCI	GTSAC	3 cut(s)	323, 577, 584
PagI	TCATGA	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	280, 460
PkrI	GCNGC	4 cut(s)	202, 205, 718, 769
PleI	GAGTC	3 cut(s)	113, 150, 692
PpsI	GAGTC	3 cut(s)	113, 150, 692
PpuMI	RGGWCCY	1 cut(s)	61
PshBI	ATTAAT	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	63, 520
PspGI	CCWGG	2 cut(s)	63, 520
PspPI	GGNCC	2 cut(s)	61, 388
PspPPI	RGGWCCY	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	206
RseI	CAYNNNNRTG	3 cut(s)	20, 43, 575
SaqAI	TTAA	3 cut(s)	147, 213, 318
SatI	GCNGC	4 cut(s)	201, 204, 717, 768
Sau3AI	GATC	3 cut(s)	5, 508, 636
Sau96I	GGNCC	2 cut(s)	61, 388
SchI	GAGTC	3 cut(s)	113, 150, 692
ScrFI	CCNGG	2 cut(s)	65, 522
SduI	GDGCHC	1 cut(s)	529
SexAI	ACCWGGT	1 cut(s)	520
SfaNI	GCATC	2 cut(s)	403, 699
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	61, 388
SmiMI	CAYNNNNRTG	3 cut(s)	20, 43, 575
SmlI	CTYRAG	2 cut(s)	528, 548
SmoI	CTYRAG	2 cut(s)	528, 548
Sse9I	AATT	9 cut(s)	126, 182, 260, 360, 537, 589, 604, 735, 759
SsiI	CCGC	1 cut(s)	716
SspMI	CTAG	3 cut(s)	428, 464, 497
StyD4I	CCNGG	2 cut(s)	63, 520
StyI	CCWWGG	2 cut(s)	228, 234
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	106, 411
TasI	AATT	9 cut(s)	126, 182, 260, 360, 537, 589, 604, 735, 759
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	2 cut(s)	280, 460
Tru1I	TTAA	3 cut(s)	147, 213, 318
Tru9I	TTAA	3 cut(s)	147, 213, 318
TscAI	CASTG	4 cut(s)	144, 223, 519, 675
TseFI	GTSAC	3 cut(s)	323, 577, 584
TseI	GCWGC	3 cut(s)	200, 203, 767
Tsp45I	GTSAC	3 cut(s)	323, 577, 584
TspDTI	ATGAA	5 cut(s)	176, 204, 288, 572, 800
TspRI	CASTG	4 cut(s)	144, 223, 519, 675
VpaK11BI	GGWCC	2 cut(s)	61, 388
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	3 cut(s)	182, 260, 604
XspI	CTAG	3 cut(s)	428, 464, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.