RLG00000035827

Copper-transporting ATPase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
72286370 .. 72290608
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035827

Sequence Viewer

Length: 1137 bp
ATGAGATCAGCAAACACAGGTATAGTGGGGCTTGTTGAGTCAGCTCAGATGGCAAAAGCTCCTATTCAGAAGTTTACTGACCGCATTTCTAAATTCTTTGTGGAACTGTCCATGGATAGCTTTCAGCTTGCTCTCCAGTTTGGATCTTTGTCATGGTTATTGCGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTACAATTGGGAAGCCACTGCTTGTTAACACACGACTCATGAAAAATATAGTGCTTCGAGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTACTGGTCACGGGGTGAAGGCTATTGTTCAGGGTAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGCAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTCGAGTTCTAGCAATATCTGATCCACTGAAACCAAGTGCTCAAGAAGTAATTACCATACTCAAGTCGATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAACTGCAAATTCTATTGCCAATGAAGTTGGTATTGATACTGTTATAGCCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTAGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTCTGATGTTCGATGGACTATTCCCGATGGCGAACTCAGCTGCCGGAGACCCGGTCTCCATCAGTGTGGTGACCCCAATAAGGTGGCCAAGGGGACTAGGCGTCAATTTGGTGTGGACCTGGATTTTGTGCCGTAACCAGATCCGTGCTACCTGGACCAGATTAGGACCAGATCAGATTGAGAAGAACATGGTAAGGCTTCCAGCCCGATCGTAA

Protein Analysis

379

Amino Acids

40.96

Weight (kDa)

5.53

Isoelectric Point (pI)

26.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 86 - 279 2.4e-24 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 82, 830
AclWI GGATC 3 cut(s) 151, 578, 1057
AcoI YGGCCR 2 cut(s) 306, 1007
AcsI RAATTY 4 cut(s) 92, 257, 335, 679
AcuI CTGAAG 1 cut(s) 756
AcyI GRCGYC 1 cut(s) 1023
AdeI CACNNNGTG 1 cut(s) 406
AfiI CCNNNNNNNGG 1 cut(s) 1002
AhdI GACNNNNNGTC 1 cut(s) 1022
AhlI ACTAGT 1 cut(s) 823
AjnI CCWGG 2 cut(s) 1040, 1073
AluBI AGCT 8 cut(s) 44, 59, 120, 127, 281, 453, 512, 962
AluI AGCT 8 cut(s) 44, 59, 120, 127, 281, 453, 512, 962
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 2 cut(s) 963, 982
AlwI GGATC 3 cut(s) 151, 578, 1057
AlwNI CAGNNNCTG 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 564
AoxI GGCC 4 cut(s) 306, 312, 365, 1007
ApeKI GCWGC 5 cut(s) 275, 278, 512, 881, 962
ApoI RAATTY 4 cut(s) 92, 257, 335, 679
ArsI GACNNNNNNTTYG 2 cut(s) 1030, 1062
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 5 cut(s) 365, 463, 1038, 1077, 1088
AsuC2I CCSGG 2 cut(s) 364, 974
AsuHPI GGTGA 6 cut(s) 418, 664, 671, 728, 807, 1003
AvaI CYCGRG 1 cut(s) 564
AvaII GGWCC 4 cut(s) 463, 1038, 1077, 1088
BalI TGGCCA 2 cut(s) 308, 1009
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 604
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 5 cut(s) 262, 290, 499, 893, 949
BccI CCATC 8 cut(s) 43, 451, 545, 784, 794, 929, 943, 989
BceAI ACGGC 1 cut(s) 1038
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 2 cut(s) 1042, 1075
BclI TGATCA 1 cut(s) 733
BcnI CCSGG 2 cut(s) 364, 974
BcoDI GTCTC 2 cut(s) 963, 982
BcuI ACTAGT 1 cut(s) 823
BfaI CTAG 5 cut(s) 503, 539, 572, 824, 1019
BfmI CTRYAG 2 cut(s) 276, 513
BisI GCNGC 6 cut(s) 276, 279, 513, 831, 882, 963
BlsI GCNGC 6 cut(s) 277, 280, 514, 832, 883, 964
Bme1390I CCNGG 4 cut(s) 364, 974, 1042, 1075
Bme18I GGWCC 4 cut(s) 463, 1038, 1077, 1088
BmeRI GACNNNNNGTC 1 cut(s) 1022
BmeT110I CYCGRG 1 cut(s) 564
BmgT120I GGNCC 5 cut(s) 365, 463, 1038, 1077, 1088
BmrFI CCNGG 4 cut(s) 364, 974, 1042, 1075
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 2 cut(s) 478, 813
BmuI ACTGGG 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 2 cut(s) 588, 608
BpuMI CCSGG 2 cut(s) 364, 974
BsaHI GRCGYC 1 cut(s) 1023
BsaI GGTCTC 2 cut(s) 963, 982
BsaJI CCNNGG 4 cut(s) 111, 303, 309, 1010
BsaXI ACNNNNNCTCC 6 cut(s) 371, 401, 960, 962, 990, 992
Bsc4I CCNNNNNNNGG 1 cut(s) 1002
Bse1I ACTGG 3 cut(s) 136, 400, 535
Bse3DI GCAATG 2 cut(s) 471, 867
BseBI CCWGG 2 cut(s) 1042, 1075
BseDI CCNNGG 4 cut(s) 111, 303, 309, 1010
BseLI CCNNNNNNNGG 1 cut(s) 1002
BseMI GCAATG 2 cut(s) 471, 867
BseMII CTCAG 3 cut(s) 59, 273, 972
BseNI ACTGG 3 cut(s) 136, 400, 535
BseXI GCAGC 5 cut(s) 262, 290, 499, 893, 949
Bsh1285I CGRYCG 1 cut(s) 1133
BshFI GGCC 4 cut(s) 308, 314, 367, 1009
BsiEI CGRYCG 1 cut(s) 1133
BsiHKAI GWGCWC 1 cut(s) 604
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 3 cut(s) 363, 966, 974
BslFI GGGAC 2 cut(s) 206, 1029
BslI CCNNNNNNNGG 1 cut(s) 1002
BsmAI GTCTC 2 cut(s) 963, 982
BsmFI GGGAC 2 cut(s) 206, 1029
BsnI GGCC 4 cut(s) 308, 314, 367, 1009
Bso31I GGTCTC 2 cut(s) 963, 982
BsoBI CYCGRG 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 7 cut(s) 5, 143, 583, 733, 1062, 1093, 1130
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 2 cut(s) 82, 830
BspANI GGCC 4 cut(s) 308, 314, 367, 1009
BspCNI CTCAG 3 cut(s) 58, 274, 971
BspHI TCATGA 1 cut(s) 234
BspMAI CTGCAG 2 cut(s) 280, 517
BspPI GGATC 3 cut(s) 151, 578, 1057
BspTNI GGTCTC 2 cut(s) 963, 982
BsrDI GCAATG 2 cut(s) 471, 867
BsrI ACTGG 3 cut(s) 136, 400, 535
BssECI CCNNGG 4 cut(s) 111, 303, 309, 1010
BssMI GATC 7 cut(s) 5, 143, 583, 733, 1062, 1093, 1130
BssNI GRCGYC 1 cut(s) 1023
BssT1I CCWWGG 4 cut(s) 111, 303, 309, 1010
Bst2UI CCWGG 2 cut(s) 1042, 1075
Bst4CI ACNGT 4 cut(s) 108, 293, 712, 784
Bst6I CTCTTC 2 cut(s) 345, 896
BstACI GRCGYC 1 cut(s) 1023
BstAPI GCANNNNNTGC 2 cut(s) 512, 854
BstC8I GCNNGC 4 cut(s) 129, 522, 768, 859
BstDEI CTNAG 3 cut(s) 45, 282, 958
BstDSI CCRYGG 1 cut(s) 111
BstEII GGTNACC 1 cut(s) 991
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 7 cut(s) 8, 146, 586, 736, 1065, 1096, 1133
BstMAI GTCTC 2 cut(s) 963, 982
BstMBI GATC 7 cut(s) 5, 143, 583, 733, 1062, 1093, 1130
BstMCI CGRYCG 1 cut(s) 1133
BstMWI GCNNNNNNNGC 9 cut(s) 50, 169, 373, 512, 521, 827, 854, 878, 959
BstNI CCWGG 2 cut(s) 1042, 1075
BstPI GGTNACC 1 cut(s) 991
BstSCI CCNGG 4 cut(s) 362, 972, 1040, 1073
BstSFI CTRYAG 2 cut(s) 276, 513
BstV1I GCAGC 5 cut(s) 262, 290, 499, 893, 949
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 2 cut(s) 143, 1062
BstXI CCANNNNNNTGG 2 cut(s) 988, 1005
BstYI RGATCY 2 cut(s) 143, 1062
BsuRI GGCC 4 cut(s) 308, 314, 367, 1009
BtgI CCRYGG 1 cut(s) 111
BtgZI GCGATG 1 cut(s) 803
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 5 cut(s) 212, 298, 587, 780, 991
Cac8I GCNNGC 4 cut(s) 129, 522, 768, 859
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 5 cut(s) 365, 463, 1038, 1077, 1088
CseI GACGC 1 cut(s) 1012
CviAII CATG 5 cut(s) 112, 153, 235, 377, 1111
DdeI CTNAG 3 cut(s) 45, 282, 958
DpnI GATC 7 cut(s) 7, 145, 585, 735, 1064, 1095, 1132
DpnII GATC 7 cut(s) 5, 143, 583, 733, 1062, 1093, 1130
DraIII CACNNNGTG 1 cut(s) 406
DriI GACNNNNNGTC 1 cut(s) 1022
EaeI YGGCCR 2 cut(s) 306, 1007
Eam1104I CTCTTC 2 cut(s) 345, 896
Eam1105I GACNNNNNGTC 1 cut(s) 1022
EarI CTCTTC 2 cut(s) 345, 896
Eco130I CCWWGG 4 cut(s) 111, 303, 309, 1010
Eco31I GGTCTC 2 cut(s) 963, 982
Eco47I GGWCC 4 cut(s) 463, 1038, 1077, 1088
Eco57I CTGAAG 1 cut(s) 756
Eco88I CYCGRG 1 cut(s) 564
Eco91I GGTNACC 1 cut(s) 991
EcoO65I GGTNACC 1 cut(s) 991
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 1040, 1073
EcoT14I CCWWGG 4 cut(s) 111, 303, 309, 1010
ErhI CCWWGG 4 cut(s) 111, 303, 309, 1010
FaeI CATG 5 cut(s) 115, 156, 238, 380, 1114
FaqI GGGAC 2 cut(s) 206, 1029
FatI CATG 5 cut(s) 111, 152, 234, 376, 1110
FbaI TGATCA 1 cut(s) 733
Fnu4HI GCNGC 6 cut(s) 276, 279, 513, 831, 882, 963
Fsp4HI GCNGC 6 cut(s) 276, 279, 513, 831, 882, 963
FspBI CTAG 5 cut(s) 503, 539, 572, 824, 1019
GlaI GCGC 1 cut(s) 375
GluI GCNGC 6 cut(s) 276, 279, 513, 831, 882, 963
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 4 cut(s) 308, 314, 367, 1009
HapII CCGG 3 cut(s) 363, 966, 974
HgaI GACGC 1 cut(s) 1012
HhaI GCGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 1023
Hin1II CATG 5 cut(s) 115, 156, 238, 380, 1114
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HincII GTYRAC 2 cut(s) 223, 289
HindII GTYRAC 2 cut(s) 223, 289
HinfI GANTC 6 cut(s) 38, 194, 231, 355, 535, 812
HpaI GTTAAC 2 cut(s) 223, 289
HpaII CCGG 3 cut(s) 363, 966, 974
HphI GGTGA 6 cut(s) 418, 664, 671, 728, 807, 1003
Hpy166II GTNNAC 7 cut(s) 75, 167, 223, 289, 296, 463, 1038
Hpy188I TCNGA 6 cut(s) 48, 69, 341, 583, 927, 1098
Hpy188III TCNNGA 4 cut(s) 235, 254, 605, 946
Hpy8I GTNNAC 7 cut(s) 75, 167, 223, 289, 296, 463, 1038
HpyAV CCTTC 2 cut(s) 403, 751
HpyCH4III ACNGT 4 cut(s) 108, 293, 712, 784
HpyCH4V TGCA 8 cut(s) 172, 278, 476, 491, 515, 677, 766, 872
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 169, 373, 512, 521, 827, 854, 878, 959
HpyF3I CTNAG 3 cut(s) 45, 282, 958
Hsp92I GRCGYC 1 cut(s) 1023
Hsp92II CATG 5 cut(s) 115, 156, 238, 380, 1114
HspAI GCGC 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 733
KspAI GTTAAC 2 cut(s) 223, 289
Kzo9I GATC 7 cut(s) 5, 143, 583, 733, 1062, 1093, 1130
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 5 cut(s) 262, 290, 499, 893, 949
LweI GCATC 2 cut(s) 478, 813
MaeI CTAG 5 cut(s) 503, 539, 572, 824, 1019
MaeIII GTNAC 5 cut(s) 398, 652, 659, 991, 1055
MalI GATC 7 cut(s) 7, 145, 585, 735, 1064, 1095, 1132
MboI GATC 7 cut(s) 5, 143, 583, 733, 1062, 1093, 1130
MboII GAAGA 5 cut(s) 356, 362, 506, 913, 1117
MfeI CAATTG 4 cut(s) 201, 664, 849, 873
MflI RGATCY 2 cut(s) 143, 1062
MhlI GDGCHC 1 cut(s) 604
MlsI TGGCCA 2 cut(s) 308, 1009
MluNI TGGCCA 2 cut(s) 308, 1009
MlyI GAGTC 4 cut(s) 47, 188, 225, 806
MnlI CCTC 4 cut(s) 277, 397, 871, 924
Mox20I TGGCCA 2 cut(s) 308, 1009
MscI TGGCCA 2 cut(s) 308, 1009
MseI TTAA 2 cut(s) 222, 288
MslI CAYNNNNRTG 2 cut(s) 650, 986
Msp20I TGGCCA 2 cut(s) 308, 1009
MspA1I CMGCKG 2 cut(s) 281, 962
MspI CCGG 3 cut(s) 363, 966, 974
MspR9I CCNGG 4 cut(s) 364, 974, 1042, 1075
MunI CAATTG 4 cut(s) 201, 664, 849, 873
MvaI CCWGG 2 cut(s) 1042, 1075
MwoI GCNNNNNNNGC 9 cut(s) 50, 169, 373, 512, 521, 827, 854, 878, 959
NciI CCSGG 2 cut(s) 364, 974
NcoI CCATGG 1 cut(s) 111
NdeII GATC 7 cut(s) 5, 143, 583, 733, 1062, 1093, 1130
NlaIII CATG 5 cut(s) 115, 156, 238, 380, 1114
NmuCI GTSAC 4 cut(s) 398, 652, 659, 991
PaeR7I CTCGAG 1 cut(s) 564
PagI TCATGA 1 cut(s) 234
PfeI GAWTC 2 cut(s) 355, 535
PflFI GACNNNGTC 1 cut(s) 974
PkrI GCNGC 6 cut(s) 277, 280, 514, 832, 883, 964
Ple19I CGATCG 1 cut(s) 1133
PleI GAGTC 4 cut(s) 46, 188, 225, 806
PpsI GAGTC 4 cut(s) 46, 188, 225, 806
Psp6I CCWGG 2 cut(s) 1040, 1073
PspEI GGTNACC 1 cut(s) 991
PspGI CCWGG 2 cut(s) 1040, 1073
PspPI GGNCC 5 cut(s) 365, 463, 1038, 1077, 1088
PspXI VCTCGAGB 1 cut(s) 564
PstI CTGCAG 2 cut(s) 280, 517
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 2 cut(s) 143, 1062
PsyI GACNNNGTC 1 cut(s) 974
PvuI CGATCG 1 cut(s) 1133
PvuII CAGCTG 2 cut(s) 281, 962
RseI CAYNNNNRTG 2 cut(s) 650, 986
SaqAI TTAA 2 cut(s) 222, 288
SatI GCNGC 6 cut(s) 276, 279, 513, 831, 882, 963
Sau3AI GATC 7 cut(s) 5, 143, 583, 733, 1062, 1093, 1130
Sau96I GGNCC 5 cut(s) 365, 463, 1038, 1077, 1088
SchI GAGTC 4 cut(s) 47, 188, 225, 806
ScrFI CCNGG 4 cut(s) 364, 974, 1042, 1075
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 2 cut(s) 478, 813
SfcI CTRYAG 2 cut(s) 276, 513
Sfr274I CTCGAG 1 cut(s) 564
SinI GGWCC 4 cut(s) 463, 1038, 1077, 1088
SlaI CTCGAG 1 cut(s) 564
SmiMI CAYNNNNRTG 2 cut(s) 650, 986
SmlI CTYRAG 3 cut(s) 564, 603, 623
SmoI CTYRAG 3 cut(s) 564, 603, 623
SpeI ACTAGT 1 cut(s) 823
SsiI CCGC 2 cut(s) 82, 830
SspMI CTAG 5 cut(s) 503, 539, 572, 824, 1019
StyD4I CCNGG 4 cut(s) 362, 972, 1040, 1073
StyI CCWWGG 4 cut(s) 111, 303, 309, 1010
TaaI ACNGT 4 cut(s) 108, 293, 712, 784
TaqI TCGA 6 cut(s) 181, 253, 486, 565, 629, 933
TauI GCSGC 1 cut(s) 833
TfiI GAWTC 2 cut(s) 355, 535
Tru1I TTAA 2 cut(s) 222, 288
Tru9I TTAA 2 cut(s) 222, 288
TscAI CASTG 5 cut(s) 219, 298, 594, 787, 991
TseFI GTSAC 4 cut(s) 398, 652, 659, 991
TseI GCWGC 5 cut(s) 275, 278, 512, 881, 962
Tsp45I GTSAC 4 cut(s) 398, 652, 659, 991
TspDTI ATGAA 6 cut(s) 251, 279, 363, 647, 708, 914
TspGWI ACGGA 1 cut(s) 1055
TspRI CASTG 5 cut(s) 219, 298, 594, 787, 991
Tth111I GACNNNGTC 1 cut(s) 974
VpaK11BI GGWCC 4 cut(s) 463, 1038, 1077, 1088
XapI RAATTY 4 cut(s) 92, 257, 335, 679
XhoI CTCGAG 1 cut(s) 564
XspI CTAG 5 cut(s) 503, 539, 572, 824, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.