Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Reverse (-)

79765747 .. 79766940

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTGACAGGTGACAATTGGGGAACTGCAAATTCTATTGCCAATGAAGTTGGTATTGATATTGTTATAGCCGAAGCGAAACTTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

93

Amino Acids

9.68

Weight (kDa)

4.39

Isoelectric Point (pI)

16.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	1 - 63	4.1e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	182, 233
ApoI	RAATTY	1 cut(s)	31
AsuHPI	GGTGA	4 cut(s)	16, 23, 80, 159
BbvI	GCAGC	2 cut(s)	194, 245
BccI	CCATC	2 cut(s)	136, 146
BclI	TGATCA	1 cut(s)	85
BisI	GCNGC	2 cut(s)	183, 234
BlsI	GCNGC	2 cut(s)	184, 235
BmsI	GCATC	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	194, 245
Bsp143I	GATC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	219
BssMI	GATC	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	120, 211
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 206, 230
BstV1I	GCAGC	2 cut(s)	194, 245
BtgZI	GCGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	120, 211
CviJI	RGCY	3 cut(s)	71, 122, 129
CviKI_1	RGCY	3 cut(s)	71, 122, 129
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	108
FaiI	YATR	1 cut(s)	68
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	183, 234
Fsp4HI	GCNGC	2 cut(s)	183, 234
GluI	GCNGC	2 cut(s)	183, 234
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	4 cut(s)	16, 23, 80, 159
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	29, 118, 224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 206, 230
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	5 cut(s)	104, 104, 111, 183, 195
Lsp1109I	GCAGC	2 cut(s)	194, 245
LweI	GCATC	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	4, 11
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	265
MfeI	CAATTG	3 cut(s)	16, 201, 225
MluCI	AATT	5 cut(s)	16, 31, 113, 201, 225
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	223, 276
MunI	CAATTG	3 cut(s)	16, 201, 225
MwoI	GCNNNNNNNGC	3 cut(s)	179, 206, 230
NdeII	GATC	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	4, 11
PkrI	GCNGC	2 cut(s)	184, 235
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
SatI	GCNGC	2 cut(s)	183, 234
Sau3AI	GATC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	158
SetI	ASST	2 cut(s)	13, 263
SfaNI	GCATC	1 cut(s)	165
SgeI	CNNG	8 cut(s)	21, 95, 103, 131, 138, 182, 188, 222
Sse9I	AATT	5 cut(s)	16, 31, 113, 201, 225
TaaI	ACNGT	1 cut(s)	136
TasI	AATT	5 cut(s)	16, 31, 113, 201, 225
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	2 cut(s)	4, 11
TseI	GCWGC	2 cut(s)	182, 233
Tsp45I	GTSAC	2 cut(s)	4, 11
TspDTI	ATGAA	2 cut(s)	60, 266
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.