MD04G1150100.v1.1

transposition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0001340
Physical Location & Seq
Forward (+)
23873478 .. 23873777
300 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1150100.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGCGGTAGTAGCTGTTAAGGTGTTAAACCTTCAACAAGAAGGAGCTTCCAGGAGTTTCATTGATGAATGCAAAACTTTAAGAAGTATAAGGCACTGCAATCTTCTCAAGATCATTACTGCATGCTGTATTTTTCAGTTAAAAACTAAGTTGCAAAACATTACGAAGGGAACATATTCAGTTTCAACATATTTGCAACGAATTAAAGATGTGAGGGATCATCTTTCTGCAGCTGGTGTAACATTTGGAGATGATGATATTGTGAAATTGGCACTGAAAGGTTTGCCTTCTGAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HTH_21 rve

Protein Analysis

100

Amino Acids

10.97

Weight (kDa)

9.21

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 225
AgsI TTSAA 2 cut(s) 35, 186
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 3 cut(s) 14, 47, 233
AluI AGCT 3 cut(s) 14, 47, 233
AlwI GGATC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 74
Bsp143I GATC 2 cut(s) 111, 217
BspACI CCGC 1 cut(s) 5
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 225
BssMI GATC 2 cut(s) 111, 217
Bst2UI CCWGG 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 2 cut(s) 114, 220
BstMBI GATC 2 cut(s) 111, 217
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 94, 272
Cac8I GCNNGC 1 cut(s) 124
CviAII CATG 1 cut(s) 123
CviJI RGCY 3 cut(s) 14, 47, 233
CviKI_1 RGCY 3 cut(s) 14, 47, 233
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 113, 219
DpnII GATC 2 cut(s) 111, 217
EcoRII CCWGG 1 cut(s) 50
FaeI CATG 1 cut(s) 126
FaiI YATR 5 cut(s) 89, 124, 175, 190, 298
FatI CATG 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 231
Hin1II CATG 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 1 cut(s) 109
HpyAV CCTTC 4 cut(s) 35, 41, 160, 297
HpyCH4V TGCA 6 cut(s) 72, 99, 122, 154, 196, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 1 cut(s) 126
Kzo9I GATC 2 cut(s) 111, 217
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 37, 64, 219
Lsp1109I GCAGC 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 113, 219
MboI GATC 2 cut(s) 111, 217
MboII GAAGA 1 cut(s) 95
MluCI AATT 2 cut(s) 201, 266
MnlI CCTC 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 175
MseI TTAA 5 cut(s) 18, 26, 80, 140, 204
MspA1I CMGCKG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 111, 217
NlaIII CATG 1 cut(s) 126
NspI RCATGY 1 cut(s) 126
PaeI GCATGC 1 cut(s) 126
PctI GAATGC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PstI CTGCAG 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 233
SaqAI TTAA 5 cut(s) 18, 26, 80, 140, 204
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 2 cut(s) 111, 217
ScrFI CCNGG 1 cut(s) 52
SetI ASST 6 cut(s) 16, 24, 33, 49, 235, 283
SfcI CTRYAG 1 cut(s) 228
SgeI CNNG 6 cut(s) 50, 63, 64, 121, 135, 246
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SphI GCATGC 1 cut(s) 126
Sse9I AATT 2 cut(s) 201, 266
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 50
TasI AATT 2 cut(s) 201, 266
Tru1I TTAA 5 cut(s) 18, 26, 80, 140, 204
Tru9I TTAA 5 cut(s) 18, 26, 80, 140, 204
TscAI CASTG 2 cut(s) 101, 279
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 49, 81
TspRI CASTG 2 cut(s) 101, 279
XceI RCATGY 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.