Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001340

Physical Location & Seq

Genomic Coordinates Reverse (-)

32564858 .. 32565996

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAAAACCATAATCGGGGCCATGCATATCCCTATTTCAACACAAGAATTAAGGACTCTTTTGCTCATTGCTGAAGCTGAACTTGAAGAAGCTCACATGTCTATTTCCTTGCCTTCCAAGAATGAAATTGTAGCACATGATGATAGTTTCGGAGGGGTTACTCCTGCACCGACTCTTGTTACAAATGTCAAATATGATGCTAAAGCTTTTATGCCTACAACTAGTGTTTCTTCTTCTATTGAATACACCGAACAGTCCATGCCTAATACAAGGTATATGATGAGGGATGCTCCTACCGCTGTGTCTAATAGAATCTGCTATGTCACCGCATCTGTTCCTACAATGAATTCTACATATGGTGCAAATACTGTTATACAAGATGCGAGTTCCATTATGCAATCTATGCCCATCAATGATCCCACATTCAAACAATGGTTTGTACAACCACAAGAAGATGTTGGATATGCTTACAATAATGGTGGAATTCAGTTCAACGAAGCATTCAATTCGGTGCTACTCATCCAAATAAAGGTCTCATGCAACATGGTTTCTAACAACAGAGTGAAGGTTTCTCACAGCAAGGCTACTCAAATTCAATCATGTGTCGGCTATGTAAAAAGATTGGTCATTCTGCATCTAGTTGTCCCTGTGTGCGGCTTGATGTCGGGCCCTCGCATCAAGCCGAGGAGGGGTATTAGGATTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

25.87

Weight (kDa)

8.66

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05651 FvH4_5g06481
malus_domestica	MD04G1150100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0366871 RchiOBHm_Chr2g0112811 RchiOBHm_Chr5g0022021 RchiOBHm_Chr5g0050161 RchiOBHm_Chr7g0178931
rosa_laevigata	RLG00000030270 RLG00000030274 RLG00000030285 RLG00000030289
rosa_multiflora	Rmu_sc0000206.1_g000011 Rmu_sc0000539.1_g000041 Rmu_sc0001706.1_g000020 Rmu_sc0002245.1_g000029 Rmu_sc0002935.1_g000016 Rmu_sc0002952.1_g000016 Rmu_sc0002952.1_g000017 Rmu_sc0003371.1_g000005 Rmu_sc0004193.1_g000005 Rmu_sc0004359.1_g000018 Rmu_sc0006422.1_g000014 Rmu_sc0007594.1_g000001 Rmu_sc0010925.1_g000018 Rmu_sc0013146.1_g000003 Rmu_sc0031630.1_g000002 Rmu_sc0033466.1_g000001 Rmu_ssc0000079.1_g000006 Rmu_ssc0000423.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004520 Rroxscaffold_1G00005520 Rroxscaffold_1G00041540 Rroxscaffold_1G00045310 Rroxscaffold_5G00361650 Rroxscaffold_6G00388920 Rroxscaffold_6G00405980 Rroxscaffold_6G00410140 Rroxscaffold_6G00423840 Rroxscaffold_7G00200050
rosa_rugosa	Rorug02G0433500 Rorug02G0433600 Rorug02G0433600 Rorug02G0433700 Rorug04G0166100.1 Rorug05G0053500 Rorug06G0481300
rosa_samantha	Rh1CG036200 Rh4AG051700 Rh4BG049000 Rh4CG055700
rosa_wichuraiana	Rw0G022690 Rw1G035930 Rw4G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	297, 327, 654
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	3 cut(s)	346, 483, 591
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	4 cut(s)	15, 529, 653, 689
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	7 cut(s)	39, 86, 242, 427, 493, 505, 596
AhlI	ACTAGT	1 cut(s)	221
AluBI	AGCT	3 cut(s)	77, 92, 206
AluI	AGCT	3 cut(s)	77, 92, 206
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	2 cut(s)	18, 667
ApaI	GGGCCC	1 cut(s)	671
ApoI	RAATTY	3 cut(s)	346, 483, 591
AspS9I	GGNCC	3 cut(s)	18, 667, 668
AsuHPI	GGTGA	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	671
BanII	GRGCYC	1 cut(s)	671
BccI	CCATC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	489, 523
BcoDI	GTCTC	1 cut(s)	538
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	2 cut(s)	222, 638
BisI	GCNGC	1 cut(s)	655
BlsI	GCNGC	1 cut(s)	656
BmgT120I	GGNCC	3 cut(s)	18, 667, 668
BmiI	GGNNCC	2 cut(s)	19, 669
BmsI	GCATC	6 cut(s)	187, 277, 338, 370, 643, 684
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 529, 653, 689
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	2 cut(s)	292, 519
BseLI	CCNNNNNNNGG	4 cut(s)	15, 529, 653, 689
BseMI	GCAATG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	700
BseSI	GKGCMC	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	20, 669
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	4 cut(s)	15, 529, 653, 689
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	20, 669
Bso31I	GGTCTC	1 cut(s)	538
Bsp120I	GGGCCC	1 cut(s)	667
Bsp1286I	GDGCHC	1 cut(s)	671
Bsp1407I	TGTACA	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	415
BspACI	CCGC	3 cut(s)	297, 327, 654
BspANI	GGCC	2 cut(s)	20, 669
BspLI	GGNNCC	2 cut(s)	19, 669
BspPI	GGATC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	538
BsrDI	GCAATG	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	683
BssMI	GATC	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	255, 370
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstAUI	TGTACA	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	292, 519
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 403
BstNSI	RCATGY	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	20, 669
BtsCI	GGATG	2 cut(s)	292, 519
Cfr13I	GGNCC	3 cut(s)	18, 667, 668
Csp6I	GTAC	1 cut(s)	440
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	8 cut(s)	22, 97, 137, 259, 537, 544, 600, 705
CviJI	RGCY	9 cut(s)	20, 77, 92, 206, 584, 609, 657, 669, 682
CviKI_1	RGCY	9 cut(s)	20, 77, 92, 206, 584, 609, 657, 669, 682
CviQI	GTAC	1 cut(s)	440
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	671
Eco31I	GGTCTC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRI	GAATTC	2 cut(s)	346, 483
EcoT22I	ATGCAT	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	671
FaeI	CATG	8 cut(s)	25, 100, 140, 262, 540, 547, 603, 708
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	8 cut(s)	21, 96, 136, 258, 536, 543, 599, 704
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	655
FokI	GGATG	2 cut(s)	299, 506
FriOI	GRGCYC	1 cut(s)	671
Fsp4HI	GCNGC	1 cut(s)	655
FspBI	CTAG	2 cut(s)	222, 638
GluI	GCNGC	1 cut(s)	655
HaeIII	GGCC	2 cut(s)	20, 669
Hin1II	CATG	8 cut(s)	25, 100, 140, 262, 540, 547, 603, 708
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	3 cut(s)	55, 172, 312
HphI	GGTGA	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	123, 559
HpyCH4III	ACNGT	2 cut(s)	255, 370
HpyCH4V	TGCA	6 cut(s)	25, 167, 362, 397, 540, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 403
Hsp92II	CATG	8 cut(s)	25, 100, 140, 262, 540, 547, 603, 708
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	2 cut(s)	177, 660
LweI	GCATC	6 cut(s)	187, 277, 338, 370, 643, 684
MaeI	CTAG	2 cut(s)	222, 638
MaeIII	GTNAC	3 cut(s)	157, 178, 322
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	4 cut(s)	98, 222, 225, 464
MhlI	GDGCHC	1 cut(s)	671
MluCI	AATT	6 cut(s)	47, 126, 346, 483, 505, 591
MlyI	GAGTC	2 cut(s)	49, 166
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	5 cut(s)	146, 276, 678, 681, 681
Mph1103I	ATGCAT	1 cut(s)	27
MseI	TTAA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	500
MwoI	GCNNNNNNNGC	2 cut(s)	296, 403
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	8 cut(s)	25, 100, 140, 262, 540, 547, 603, 708
NlaIV	GGNNCC	2 cut(s)	19, 669
NmeAIII	GCCGAG	1 cut(s)	708
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	27
NspI	RCATGY	1 cut(s)	100
PciI	ACATGT	1 cut(s)	96
PctI	GAATGC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	656
PleI	GAGTC	2 cut(s)	49, 166
PpsI	GAGTC	2 cut(s)	49, 166
PscI	ACATGT	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	19, 669
PspOMI	GGGCCC	1 cut(s)	667
PspPI	GGNCC	3 cut(s)	18, 667, 668
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	655
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	3 cut(s)	18, 667, 668
SchI	GAGTC	2 cut(s)	49, 166
SduI	GDGCHC	1 cut(s)	671
SetI	ASST	6 cut(s)	79, 94, 208, 275, 534, 570
SfaNI	GCATC	6 cut(s)	187, 277, 338, 370, 643, 684
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	6 cut(s)	47, 126, 346, 483, 505, 591
SsiI	CCGC	3 cut(s)	297, 327, 654
SspMI	CTAG	2 cut(s)	222, 638
TaaI	ACNGT	2 cut(s)	255, 370
TasI	AATT	6 cut(s)	47, 126, 346, 483, 505, 591
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	1 cut(s)	657
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	17, 138, 359
XapI	RAATTY	3 cut(s)	346, 483, 591
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	2 cut(s)	222, 638
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.