Rmu_sc0010925.1_g000018
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010925.1
OG0001340
Physical Location & Seq
Reverse (-)
47150 .. 50068
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010925.1_g000018.1.cds

Sequence Viewer

Length: 1260 bp
atgtctttgattgccatgcactatttggaacctccacatattatgctgccaaagggattgattgctggaattgagaccctttgctggctgaccacatgtcggaatatatggcaaggactatgttctacacttctctcctttatcataatgctactgaccacaggaaagctgcctactggtttcattgcacaaagtgaaggagtgcaaaagtctaatggtaatggaattcgcaatggagcacaaagctataatggtccacaacagctacagggaaactctcaaagtttgaaaaatggcttctcacaacgaaatgcttctactggttgtttctctcagcctactggtttcattgcacaaagtgaaggagtgcaaaagtctaatggtaatggaattcgcaatggagcacaaagctataatggtccacaacagctacagggaaactctcaaagtttgaaaaatggcttctcacaacgaaatgcttctactggttgtttctctcagcctactggtttcattgcacaaagtgaaggagtgcaaaagtctaatggtaatggaattcgcaatggagcacaaagctataatggtccacaacagctacagggcaactctcaaagtttgaaaaatggcttctcacaacgaaatgcttctacaccaggagagacttcggtaggaacagattttgagaaaatgactaaatttggtgctctagtagacattggtcggaatgtaaatgagaaaaaatctgaaacattggttggaatggattctaagcttcaattacaaattgatcaggcaatgatagacttggataaggcaaaaaaggaggatgaacttggagtaaatgtcatattggctgctaagataggaaatgaaggtacaatggaacaacctgaagaacttgaagtttcctctattcttaacactacaaatggtcttgctactataggtagtgtgattaactcgaggaagggaaagatgagcaaaggtgatggtgacaatgctaattttcatattgtttctagtagtagtgatcaaatgaagcagtctacttcactctcagctggaagcatgagaccaatggttagagtcaagcaagaagggcaacatttaatagaaagccaactggatttgaccaacagtagtaacagtttggtgtctcaagcaatggagctcaagaaagtcaaaactatgatgaattgtaggagagcttgtcaaccaatggagttatggccatcacttcctcttcttcctcctggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

419

Amino Acids

44.96

Weight (kDa)

8.99

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 711, 1046
AcoI YGGCCR 1 cut(s) 1229
AcsI RAATTY 4 cut(s) 225, 390, 555, 695
AcuI CTGAAG 1 cut(s) 912
AdeI CACNNNGTG 3 cut(s) 194, 359, 524
AfaI GTAC 1 cut(s) 877
AfiI CCNNNNNNNGG 2 cut(s) 84, 99
AflIII ACRYGT 1 cut(s) 95
AgsI TTSAA 5 cut(s) 289, 454, 619, 776, 902
AhdI GACNNNNNGTC 1 cut(s) 96
AjnI CCWGG 2 cut(s) 652, 1252
AjuI GAANNNNNNNTTGG 2 cut(s) 738, 770
Alw21I GWGCWC 5 cut(s) 241, 406, 571, 706, 1173
Alw26I GTCTC 4 cut(s) 68, 653, 1066, 1161
Ama87I CYCGRG 1 cut(s) 961
AoxI GGCC 1 cut(s) 1229
ApeKI GCWGC 3 cut(s) 46, 169, 854
ApoI RAATTY 4 cut(s) 225, 390, 555, 695
Asp700I GAANNNNTTC 4 cut(s) 313, 478, 643, 763
AspS9I GGNCC 3 cut(s) 254, 419, 584
AsuHPI GGTGA 2 cut(s) 998, 1004
AvaI CYCGRG 1 cut(s) 961
AvaII GGWCC 3 cut(s) 254, 419, 584
BalI TGGCCA 1 cut(s) 1231
BanII GRGCYC 1 cut(s) 1173
Bbv12I GWGCWC 5 cut(s) 241, 406, 571, 706, 1173
BbvI GCAGC 3 cut(s) 33, 156, 841
BccI CCATC 2 cut(s) 983, 1240
BciT130I CCWGG 2 cut(s) 654, 1254
BclI TGATCA 2 cut(s) 787, 1030
BcoDI GTCTC 4 cut(s) 68, 653, 1066, 1161
BfaI CTAG 2 cut(s) 707, 1020
BfmI CTRYAG 4 cut(s) 266, 431, 596, 942
BisI GCNGC 3 cut(s) 47, 170, 855
BlsI GCNGC 3 cut(s) 48, 171, 856
Bme1390I CCNGG 2 cut(s) 654, 1254
Bme18I GGWCC 3 cut(s) 254, 419, 584
BmeRI GACNNNNNGTC 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 961
BmgT120I GGNCC 3 cut(s) 254, 419, 584
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 654, 1254
BoxI GACNNNNGTC 1 cut(s) 717
BpuEI CTTGAG 2 cut(s) 1143, 1157
BsaI GGTCTC 2 cut(s) 68, 1066
BsaXI ACNNNNNCTCC 4 cut(s) 828, 858, 1195, 1225
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 99
Bse1I ACTGG 6 cut(s) 181, 325, 346, 490, 511, 1128
Bse3DI GCAATG 8 cut(s) 183, 238, 348, 403, 513, 568, 801, 1170
BseBI CCWGG 2 cut(s) 654, 1254
BseGI GGATG 1 cut(s) 832
BseLI CCNNNNNNNGG 2 cut(s) 84, 99
BseMI GCAATG 8 cut(s) 183, 238, 348, 403, 513, 568, 801, 1170
BseMII CTCAG 3 cut(s) 347, 512, 1071
BseNI ACTGG 6 cut(s) 181, 325, 346, 490, 511, 1128
BseXI GCAGC 3 cut(s) 33, 156, 841
BshFI GGCC 1 cut(s) 1231
BsiHKAI GWGCWC 5 cut(s) 241, 406, 571, 706, 1173
BsiHKCI CYCGRG 1 cut(s) 961
BslI CCNNNNNNNGG 2 cut(s) 84, 99
BsmAI GTCTC 4 cut(s) 68, 653, 1066, 1161
BsnI GGCC 1 cut(s) 1231
Bso31I GGTCTC 2 cut(s) 68, 1066
BsoBI CYCGRG 1 cut(s) 961
Bsp1286I GDGCHC 5 cut(s) 241, 406, 571, 706, 1173
Bsp143I GATC 2 cut(s) 787, 1030
BspANI GGCC 1 cut(s) 1231
BspCNI CTCAG 3 cut(s) 346, 511, 1070
BspLI GGNNCC 1 cut(s) 30
BspTNI GGTCTC 2 cut(s) 68, 1066
BsrDI GCAATG 8 cut(s) 183, 238, 348, 403, 513, 568, 801, 1170
BsrI ACTGG 6 cut(s) 181, 325, 346, 490, 511, 1128
BssMI GATC 2 cut(s) 787, 1030
Bst2UI CCWGG 2 cut(s) 654, 1254
Bst4CI ACNGT 2 cut(s) 1139, 1148
Bst6I CTCTTC 1 cut(s) 1248
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 5 cut(s) 333, 498, 768, 858, 1057
BstF5I GGATG 1 cut(s) 832
BstKTI GATC 2 cut(s) 790, 1033
BstMAI GTCTC 4 cut(s) 68, 653, 1066, 1161
BstMBI GATC 2 cut(s) 787, 1030
BstMWI GCNNNNNNNGC 1 cut(s) 1099
BstNI CCWGG 2 cut(s) 654, 1254
BstNSI RCATGY 1 cut(s) 99
BstPAI GACNNNNGTC 1 cut(s) 717
BstSCI CCNGG 2 cut(s) 652, 1252
BstSFI CTRYAG 4 cut(s) 266, 431, 596, 942
BstV1I GCAGC 3 cut(s) 33, 156, 841
BsuRI GGCC 1 cut(s) 1231
BtsCI GGATG 1 cut(s) 832
Cac8I GCNNGC 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 254, 419, 584
Csp6I GTAC 1 cut(s) 876
CviAII CATG 3 cut(s) 16, 96, 1069
CviQI GTAC 1 cut(s) 876
DdeI CTNAG 5 cut(s) 333, 498, 768, 858, 1057
DpnI GATC 2 cut(s) 789, 1032
DpnII GATC 2 cut(s) 787, 1030
DraIII CACNNNGTG 3 cut(s) 194, 359, 524
DriI GACNNNNNGTC 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 1229
Eam1104I CTCTTC 1 cut(s) 1248
Eam1105I GACNNNNNGTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 1248
Ecl136II GAGCTC 1 cut(s) 1171
Eco24I GRGCYC 1 cut(s) 1173
Eco31I GGTCTC 2 cut(s) 68, 1066
Eco47I GGWCC 3 cut(s) 254, 419, 584
Eco53kI GAGCTC 1 cut(s) 1171
Eco57I CTGAAG 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 961
EcoICRI GAGCTC 1 cut(s) 1171
EcoRI GAATTC 3 cut(s) 225, 390, 555
EcoRII CCWGG 2 cut(s) 652, 1252
EcoT38I GRGCYC 1 cut(s) 1173
FaeI CATG 3 cut(s) 19, 99, 1072
FatI CATG 3 cut(s) 15, 95, 1068
FbaI TGATCA 2 cut(s) 787, 1030
FblI GTMKAC 2 cut(s) 711, 1046
Fnu4HI GCNGC 3 cut(s) 47, 170, 855
FokI GGATG 1 cut(s) 839
FriOI GRGCYC 1 cut(s) 1173
Fsp4HI GCNGC 3 cut(s) 47, 170, 855
FspBI CTAG 2 cut(s) 707, 1020
GluI GCNGC 3 cut(s) 47, 170, 855
HaeIII GGCC 1 cut(s) 1231
Hin1II CATG 3 cut(s) 19, 99, 1072
HincII GTYRAC 1 cut(s) 1214
HindII GTYRAC 1 cut(s) 1214
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 2 cut(s) 764, 1086
HphI GGTGA 2 cut(s) 998, 1004
Hpy166II GTNNAC 6 cut(s) 257, 422, 587, 712, 1047, 1214
Hpy188I TCNGA 3 cut(s) 102, 723, 745
Hpy188III TCNNGA 1 cut(s) 1174
Hpy8I GTNNAC 6 cut(s) 257, 422, 587, 712, 1047, 1214
HpyAV CCTTC 6 cut(s) 191, 356, 521, 866, 961, 1091
HpyCH4III ACNGT 2 cut(s) 1139, 1148
HpyCH4V TGCA 7 cut(s) 19, 188, 205, 353, 370, 518, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 1099
HpyF3I CTNAG 5 cut(s) 333, 498, 768, 858, 1057
Hsp92II CATG 3 cut(s) 19, 99, 1072
Ksp22I TGATCA 2 cut(s) 787, 1030
Kzo9I GATC 2 cut(s) 787, 1030
LmnI GCTCC 4 cut(s) 236, 401, 566, 1168
Lsp1109I GCAGC 3 cut(s) 33, 156, 841
MaeI CTAG 2 cut(s) 707, 1020
MaeIII GTNAC 2 cut(s) 992, 1142
MalI GATC 2 cut(s) 789, 1032
MboI GATC 2 cut(s) 787, 1030
MboII GAAGA 3 cut(s) 905, 1235, 1238
MhlI GDGCHC 5 cut(s) 241, 406, 571, 706, 1173
MlsI TGGCCA 1 cut(s) 1231
MluCI AATT 9 cut(s) 69, 225, 390, 555, 695, 776, 783, 1003, 1195
MluNI TGGCCA 1 cut(s) 1231
MlyI GAGTC 1 cut(s) 1095
MmeI TCCRAC 3 cut(s) 80, 701, 736
MnlI CCTC 6 cut(s) 42, 817, 919, 957, 1251, 1260
Mox20I TGGCCA 1 cut(s) 1231
MroXI GAANNNNTTC 4 cut(s) 313, 478, 643, 763
MscI TGGCCA 1 cut(s) 1231
MseI TTAA 4 cut(s) 918, 957, 1109, 1258
Msp20I TGGCCA 1 cut(s) 1231
MspA1I CMGCKG 1 cut(s) 1061
MspR9I CCNGG 2 cut(s) 654, 1254
MvaI CCWGG 2 cut(s) 654, 1254
MwoI GCNNNNNNNGC 1 cut(s) 1099
NdeII GATC 2 cut(s) 787, 1030
NlaIII CATG 3 cut(s) 19, 99, 1072
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 992
NspI RCATGY 1 cut(s) 99
PaeR7I CTCGAG 1 cut(s) 961
PciI ACATGT 1 cut(s) 95
PdmI GAANNNNTTC 4 cut(s) 313, 478, 643, 763
PfeI GAWTC 1 cut(s) 764
PkrI GCNGC 3 cut(s) 48, 171, 856
PleI GAGTC 1 cut(s) 1094
PpsI GAGTC 1 cut(s) 1094
PscI ACATGT 1 cut(s) 95
PshAI GACNNNNGTC 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 1173
Psp6I CCWGG 2 cut(s) 652, 1252
PspGI CCWGG 2 cut(s) 652, 1252
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 3 cut(s) 254, 419, 584
PspXI VCTCGAGB 1 cut(s) 961
PvuII CAGCTG 1 cut(s) 1061
RsaI GTAC 1 cut(s) 877
RsaNI GTAC 1 cut(s) 876
SacI GAGCTC 1 cut(s) 1173
SaqAI TTAA 4 cut(s) 918, 957, 1109, 1258
SatI GCNGC 3 cut(s) 47, 170, 855
Sau3AI GATC 2 cut(s) 787, 1030
Sau96I GGNCC 3 cut(s) 254, 419, 584
SchI GAGTC 1 cut(s) 1095
ScrFI CCNGG 2 cut(s) 654, 1254
SduI GDGCHC 5 cut(s) 241, 406, 571, 706, 1173
SfcI CTRYAG 4 cut(s) 266, 431, 596, 942
Sfr274I CTCGAG 1 cut(s) 961
SinI GGWCC 3 cut(s) 254, 419, 584
SlaI CTCGAG 1 cut(s) 961
SmlI CTYRAG 3 cut(s) 961, 1158, 1172
SmoI CTYRAG 3 cut(s) 961, 1158, 1172
Sse9I AATT 9 cut(s) 69, 225, 390, 555, 695, 776, 783, 1003, 1195
SspMI CTAG 2 cut(s) 707, 1020
SstI GAGCTC 1 cut(s) 1173
StyD4I CCNGG 2 cut(s) 652, 1252
TaaI ACNGT 2 cut(s) 1139, 1148
TaqI TCGA 1 cut(s) 962
TasI AATT 9 cut(s) 69, 225, 390, 555, 695, 776, 783, 1003, 1195
TfiI GAWTC 1 cut(s) 764
Tru1I TTAA 4 cut(s) 918, 957, 1109, 1258
Tru9I TTAA 4 cut(s) 918, 957, 1109, 1258
TseFI GTSAC 1 cut(s) 992
TseI GCWGC 3 cut(s) 46, 169, 854
Tsp45I GTSAC 1 cut(s) 992
TspDTI ATGAA 8 cut(s) 172, 337, 502, 843, 885, 998, 1052, 1208
VpaK11BI GGWCC 3 cut(s) 254, 419, 584
XapI RAATTY 4 cut(s) 225, 390, 555, 695
XceI RCATGY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 2 cut(s) 22, 1224
XhoI CTCGAG 1 cut(s) 961
XmiI GTMKAC 2 cut(s) 711, 1046
XmnI GAANNNNTTC 4 cut(s) 313, 478, 643, 763
XspI CTAG 2 cut(s) 707, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.