Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000206.1

Orthogroup ID

OG0001340

Physical Location & Seq

Genomic Coordinates Reverse (-)

73412 .. 74472

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000206.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgtttacaagttgtggcctcattagatatatcgatggatcattccctcgtccaccacaacacattgttacagaagaaggtcgggttatgtttgatatgacaaaggagtacatggactgggtgcaaaatgattttgccgttatgtctatacttgcagctactctgtcaaatgatctttccttcattgttggaagtaagacttctagggaaatttggtgtcaactaaaggagaaatatgctagtgcatcggcgtataacataatgactctgaagcaaggagcccacgatgtctcagtgatcgggtatcaagatctgtggaagggcgcaattgagcttcgctggcttaaggggagcttcggtagcttgggggaactgcggtggctcgaggggagctgcaatggcttggggggagctgcggtggaagcgtggagaagaggtgcggtggaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 gag_pre-integrs

Protein Analysis

150

Amino Acids

16.8

Weight (kDa)

5.44

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05651 FvH4_5g06481
malus_domestica	MD04G1150100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0366871 RchiOBHm_Chr2g0112811 RchiOBHm_Chr5g0022021 RchiOBHm_Chr5g0050161 RchiOBHm_Chr7g0178931
rosa_laevigata	RLG00000030270 RLG00000030274 RLG00000030285 RLG00000030289
rosa_multiflora	Rmu_sc0000206.1_g000011 Rmu_sc0000539.1_g000041 Rmu_sc0001706.1_g000020 Rmu_sc0002245.1_g000029 Rmu_sc0002935.1_g000016 Rmu_sc0002952.1_g000016 Rmu_sc0002952.1_g000017 Rmu_sc0003371.1_g000005 Rmu_sc0004193.1_g000005 Rmu_sc0004359.1_g000018 Rmu_sc0006422.1_g000014 Rmu_sc0007594.1_g000001 Rmu_sc0010925.1_g000018 Rmu_sc0013146.1_g000003 Rmu_sc0031630.1_g000002 Rmu_sc0033466.1_g000001 Rmu_ssc0000079.1_g000006 Rmu_ssc0000423.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004520 Rroxscaffold_1G00005520 Rroxscaffold_1G00041540 Rroxscaffold_1G00045310 Rroxscaffold_5G00361650 Rroxscaffold_6G00388920 Rroxscaffold_6G00405980 Rroxscaffold_6G00410140 Rroxscaffold_6G00423840 Rroxscaffold_7G00200050
rosa_rugosa	Rorug02G0433500 Rorug02G0433600 Rorug02G0433600 Rorug02G0433700 Rorug04G0166100.1 Rorug05G0053500 Rorug06G0481300
rosa_samantha	Rh1CG036200 Rh4AG051700 Rh4BG049000 Rh4CG055700
rosa_wichuraiana	Rw0G022690 Rw1G035930 Rw4G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	376, 416, 440
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	110
AflII	CTTAAG	1 cut(s)	344
AluBI	AGCT	6 cut(s)	158, 334, 354, 363, 393, 413
AluI	AGCT	6 cut(s)	158, 334, 354, 363, 393, 413
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	155, 393, 413
ApoI	RAATTY	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	283
BbvI	GCAGC	3 cut(s)	167, 380, 400
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	204, 240
BfrI	CTTAAG	1 cut(s)	344
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	3 cut(s)	156, 394, 414
BlsI	GCNGC	3 cut(s)	157, 395, 415
BmeT110I	CYCGRG	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	280
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	33
BsaXI	ACNNNNNCTCC	6 cut(s)	343, 373, 402, 421, 432, 451
Bse1I	ACTGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	403
BseCI	ATCGAT	1 cut(s)	33
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	167, 380, 400
BshFI	GGCC	1 cut(s)	18
BshVI	ATCGAT	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	18
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	38, 172, 297, 310
BspACI	CCGC	3 cut(s)	376, 416, 440
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	305
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	46
BspTI	CTTAAG	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	122
BssMI	GATC	4 cut(s)	38, 172, 297, 310
Bst6I	CTCTTC	1 cut(s)	427
BstAFI	CTTAAG	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	4 cut(s)	41, 175, 300, 313
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	4 cut(s)	38, 172, 297, 310
BstMWI	GCNNNNNNNGC	4 cut(s)	340, 360, 399, 422
BstV1I	GCAGC	3 cut(s)	167, 380, 400
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	18
BsuTUI	ATCGAT	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	1 cut(s)	326
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	109
CspCI	CAANNNNNGTGG	2 cut(s)	296, 331
CviAII	CATG	1 cut(s)	112
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	4 cut(s)	40, 174, 299, 312
DpnII	GATC	4 cut(s)	38, 172, 297, 310
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	283
FaeI	CATG	1 cut(s)	115
FaiI	YATR	9 cut(s)	30, 89, 98, 113, 143, 149, 237, 255, 260
FalI	AAGNNNNNCTT	4 cut(s)	184, 216, 338, 370
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	156, 394, 414
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	3 cut(s)	156, 394, 414
FspBI	CTAG	2 cut(s)	204, 240
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	3 cut(s)	156, 394, 414
HaeIII	GGCC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HinfI	GANTC	1 cut(s)	265
Hpy166II	GTNNAC	3 cut(s)	6, 53, 221
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	3 cut(s)	6, 53, 221
HpyAV	CCTTC	3 cut(s)	71, 190, 313
HpyCH4V	TGCA	4 cut(s)	124, 155, 245, 396
HpyF10VI	GCNNNNNNNGC	4 cut(s)	340, 360, 399, 422
HpyF3I	CTNAG	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	38, 172, 297, 310
LmnI	GCTCC	4 cut(s)	278, 351, 390, 410
LpnPI	CCDG	2 cut(s)	103, 325
Lsp1109I	GCAGC	3 cut(s)	167, 380, 400
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	2 cut(s)	204, 240
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	4 cut(s)	40, 174, 299, 312
MboI	GATC	4 cut(s)	38, 172, 297, 310
MboII	GAAGA	2 cut(s)	86, 444
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	2 cut(s)	210, 327
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	5 cut(s)	29, 57, 379, 428, 439
MseI	TTAA	1 cut(s)	345
MspCI	CTTAAG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	327
MwoI	GCNNNNNNNGC	4 cut(s)	340, 360, 399, 422
NdeII	GATC	4 cut(s)	38, 172, 297, 310
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	383
PkrI	GCNGC	3 cut(s)	157, 395, 415
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	280
PspXI	VCTCGAGB	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	156, 394, 414
Sau3AI	GATC	4 cut(s)	38, 172, 297, 310
SchI	GAGTC	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	8 cut(s)	82, 160, 336, 356, 365, 395, 415, 439
SfaNI	GCATC	1 cut(s)	254
Sfr274I	CTCGAG	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	344, 383
SmoI	CTYRAG	2 cut(s)	344, 383
Sse9I	AATT	2 cut(s)	210, 327
SsiI	CCGC	3 cut(s)	376, 416, 440
SspMI	CTAG	2 cut(s)	204, 240
TaqI	TCGA	2 cut(s)	33, 384
TasI	AATT	2 cut(s)	210, 327
TatI	WGTACW	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	3 cut(s)	155, 393, 413
TspDTI	ATGAA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	300
Vha464I	CTTAAG	1 cut(s)	344
XapI	RAATTY	1 cut(s)	210
XhoI	CTCGAG	1 cut(s)	383
XspI	CTAG	2 cut(s)	204, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.