RLG00000030289
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001340
Physical Location & Seq
Forward (+)
59024610 .. 59025101
492 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030289

Sequence Viewer

Length: 327 bp
ATGGAGTGTGAGGCTAAAGTTGGTGATACTTCTCAAGTTTGTGAGTCATTGCTGACAAATGTGTCGGAAAACATGGATTTCCCGCCCTCTTCTGAAGCTAAAATTGGTGATGCTTGTGAGGTTGGCGAGACGTTGAGGGAGGTTGTTCCTGGAAACATGGATTTGCATTTTGCAGCCATCTTCAACGGTGCAGGACCATCTTCAACAGTGCAGGAGTTGGAATCTGAAGCTAAATTTGGTGATGCTTCTCATATTTGTGAAACAGTGTTGGGATTTGTTCCTGAAAACATTGATCTGCGGCCATCTTCAACAGCGCTGGAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

109

Amino Acids

11.46

Weight (kDa)

4.07

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AciI CCGC 2 cut(s) 83, 298
AcoI YGGCCR 1 cut(s) 299
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 2 cut(s) 114, 246
AfeI AGCGCT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 184, 204, 309
AjnI CCWGG 1 cut(s) 148
AjuI GAANNNNNNNTTGG 4 cut(s) 87, 119, 219, 251
AluBI AGCT 2 cut(s) 98, 230
AluI AGCT 2 cut(s) 98, 230
Alw26I GTCTC 1 cut(s) 122
Aor51HI AGCGCT 1 cut(s) 315
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 3 cut(s) 35, 119, 251
AvaII GGWCC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 185
BccI CCATC 3 cut(s) 185, 205, 310
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 317
BisI GCNGC 2 cut(s) 174, 299
BlsI GCNGC 2 cut(s) 175, 300
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 100, 232
BpuEI CTTGAG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 185
BsgI GTGCAG 2 cut(s) 210, 230
BshFI GGCC 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 122
BsmBI CGTCTC 1 cut(s) 122
BsnI GGCC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 2 cut(s) 83, 298
BspANI GGCC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 47
BssMI GATC 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 188, 208, 265
Bst6I CTCTTC 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 292
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 213, 270
CfoI GCGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 194
CviAII CATG 2 cut(s) 73, 157
CviJI RGCY 5 cut(s) 14, 98, 176, 230, 301
CviKI_1 RGCY 5 cut(s) 14, 98, 176, 230, 301
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 194
Eco47III AGCGCT 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 114, 246
EcoRII CCWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 2 cut(s) 76, 160
FaiI YATR 3 cut(s) 74, 158, 252
FatI CATG 2 cut(s) 72, 156
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 174, 299
Fsp4HI GCNGC 2 cut(s) 174, 299
GlaI GCGC 1 cut(s) 315
GluI GCNGC 2 cut(s) 174, 299
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 1 cut(s) 301
HhaI GCGC 1 cut(s) 316
Hin1II CATG 2 cut(s) 76, 160
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 2 cut(s) 44, 221
HphI GGTGA 3 cut(s) 35, 119, 251
Hpy188I TCNGA 3 cut(s) 67, 94, 226
Hpy188III TCNNGA 1 cut(s) 281
HpyCH4III ACNGT 3 cut(s) 188, 208, 265
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 4 cut(s) 166, 173, 191, 211
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 2 cut(s) 76, 160
HspAI GCGC 1 cut(s) 314
Kzo9I GATC 1 cut(s) 292
LpnPI CCDG 6 cut(s) 135, 162, 177, 197, 294, 302
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 2 cut(s) 100, 232
MaeII ACGT 1 cut(s) 131
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 4 cut(s) 81, 172, 192, 297
MluCI AATT 2 cut(s) 102, 233
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 45, 198
MnlI CCTC 5 cut(s) 4, 97, 112, 129, 133
MslI CAYNNNNRTG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NdeII GATC 1 cut(s) 292
NlaIII CATG 2 cut(s) 76, 160
PfeI GAWTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 2 cut(s) 175, 300
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 255
SatI GCNGC 2 cut(s) 174, 299
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 150
SetI ASST 5 cut(s) 100, 123, 134, 144, 232
SfaNI GCATC 2 cut(s) 100, 232
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 2 cut(s) 102, 233
SsiI CCGC 2 cut(s) 83, 298
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 3 cut(s) 188, 208, 265
TaiI ACGT 1 cut(s) 134
TasI AATT 2 cut(s) 102, 233
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 1 cut(s) 221
TscAI CASTG 2 cut(s) 213, 270
TseI GCWGC 1 cut(s) 173
TspRI CASTG 2 cut(s) 213, 270
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.