Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031630.1

Orthogroup ID

OG0001340

Physical Location & Seq

Genomic Coordinates Forward (+)

17833 .. 18846

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031630.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgtctttgcttgctgctacactatctagtgaggttctctctcttgttgttggcagtaatacttatagagaactttggtgtttgctcaatgataggtatacttctacttcttggtttaacaaagaccaactaaagaccaacttttacaaaattcaaaaaggttcatattctattgacaagtacctggatcgggtgaagactgcttgtgataagttgactaatgtagggattcatatgacagatgaagacataatagtctctgttcttcttggtttaccatcagactatactaccatgaaaaccataatcagggctaaacataacccggtttcaacacaagaattaaggtctcttttgcttgttgctgaagctgaacttgaagaggctaacaagtctatgtctttgccttccaagactgaatttgtggcacatgatgatagttgcagaagcaatggtggtatgcatcaacaatatgttattcatatgcctcaaatgcaaaccaatagtaacttgttgcagcaagtaactccctctacattcactcctagtcttgcaacctatggtggaatatcacaagtgcacaatgcatcttttcctcaaaattcaagcttcttgcagcagcctagtttttcacaactttctacaccatactacagtaccacacaacaatatgtttatggttgtttctctcaacctacaagtctcattgcaaaaagtgaagtgcaaaggtcttatgctaatggaattcgcaatggagcacaaagcaataatggtcctcaacaactacagggcaactctcaaagtttgaaaaatggcttctcacaacaaaatgataaaaatgagctaagtaattctattatgggtgcttcagcttctacaccaggagagattgtggtaggaacatattttgagaaaatgactaaatttggtgctttagcagacattggtcagaatgtgaatgagaaaaggttggaatggattctacacttccattacaaattgatcaggcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2

Protein Analysis

337

Amino Acids

37.64

Weight (kDa)

7.68

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05651 FvH4_5g06481
malus_domestica	MD04G1150100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0366871 RchiOBHm_Chr2g0112811 RchiOBHm_Chr5g0022021 RchiOBHm_Chr5g0050161 RchiOBHm_Chr7g0178931
rosa_laevigata	RLG00000030270 RLG00000030274 RLG00000030285 RLG00000030289
rosa_multiflora	Rmu_sc0000206.1_g000011 Rmu_sc0000539.1_g000041 Rmu_sc0001706.1_g000020 Rmu_sc0002245.1_g000029 Rmu_sc0002935.1_g000016 Rmu_sc0002952.1_g000016 Rmu_sc0002952.1_g000017 Rmu_sc0003371.1_g000005 Rmu_sc0004193.1_g000005 Rmu_sc0004359.1_g000018 Rmu_sc0006422.1_g000014 Rmu_sc0007594.1_g000001 Rmu_sc0010925.1_g000018 Rmu_sc0013146.1_g000003 Rmu_sc0031630.1_g000002 Rmu_sc0033466.1_g000001 Rmu_ssc0000079.1_g000006 Rmu_ssc0000423.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004520 Rroxscaffold_1G00005520 Rroxscaffold_1G00041540 Rroxscaffold_1G00045310 Rroxscaffold_5G00361650 Rroxscaffold_6G00388920 Rroxscaffold_6G00405980 Rroxscaffold_6G00410140 Rroxscaffold_6G00423840 Rroxscaffold_7G00200050
rosa_rugosa	Rorug02G0433500 Rorug02G0433600 Rorug02G0433600 Rorug02G0433700 Rorug04G0166100.1 Rorug05G0053500 Rorug06G0481300
rosa_samantha	Rh1CG036200 Rh4AG051700 Rh4BG049000 Rh4CG055700
rosa_wichuraiana	Rw0G022690 Rw1G035930 Rw4G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	195
AcsI	RAATTY	5 cut(s)	150, 419, 601, 744, 923
AcuI	CTGAAG	2 cut(s)	387, 852
AfaI	GTAC	2 cut(s)	182, 658
AfiI	CCNNNNNNNGG	2 cut(s)	190, 309
AgsI	TTSAA	5 cut(s)	155, 333, 380, 606, 808
AjnI	CCWGG	2 cut(s)	183, 880
AluBI	AGCT	4 cut(s)	371, 609, 844, 872
AluI	AGCT	4 cut(s)	371, 609, 844, 872
Alw21I	GWGCWC	2 cut(s)	582, 760
Alw26I	GTCTC	3 cut(s)	262, 354, 707
Alw44I	GTGCAC	1 cut(s)	578
AlwI	GGATC	1 cut(s)	195
ApaLI	GTGCAC	1 cut(s)	578
ApeKI	GCWGC	4 cut(s)	14, 517, 616, 619
ApoI	RAATTY	5 cut(s)	150, 419, 601, 744, 923
Asp700I	GAANNNNTTC	1 cut(s)	978
AspS9I	GGNCC	1 cut(s)	773
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	773
BaeGI	GKGCMC	1 cut(s)	582
BaeI	ACNNNNGTAYC	2 cut(s)	640, 673
BbsI	GAAGAC	2 cut(s)	203, 252
Bbv12I	GWGCWC	2 cut(s)	582, 760
BbvI	GCAGC	3 cut(s)	529, 628, 631
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	2 cut(s)	185, 882
BclI	TGATCA	1 cut(s)	1002
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	3 cut(s)	262, 354, 707
BfaI	CTAG	3 cut(s)	27, 546, 624
BfmI	CTRYAG	2 cut(s)	652, 785
BisI	GCNGC	4 cut(s)	15, 518, 617, 620
BlsI	GCNGC	4 cut(s)	16, 519, 618, 621
Bme1390I	CCNGG	3 cut(s)	185, 326, 882
Bme18I	GGWCC	1 cut(s)	773
BmgT120I	GGNCC	1 cut(s)	773
BmrFI	CCNGG	3 cut(s)	185, 326, 882
BmsI	GCATC	2 cut(s)	472, 596
BoxI	GACNNNNGTC	1 cut(s)	945
BpiI	GAAGAC	2 cut(s)	203, 252
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpuMI	CCSGG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	354
BsaXI	ACNNNNNCTCC	4 cut(s)	526, 556, 876, 906
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 309
Bse3DI	GCAATG	3 cut(s)	457, 705, 757
BseBI	CCWGG	2 cut(s)	185, 882
BseLI	CCNNNNNNNGG	2 cut(s)	190, 309
BseMI	GCAATG	3 cut(s)	457, 705, 757
BseSI	GKGCMC	1 cut(s)	582
BseXI	GCAGC	3 cut(s)	529, 628, 631
BsiHKAI	GWGCWC	2 cut(s)	582, 760
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	190, 309
BsmAI	GTCTC	3 cut(s)	262, 354, 707
Bso31I	GGTCTC	1 cut(s)	354
Bsp1286I	GDGCHC	2 cut(s)	582, 760
Bsp143I	GATC	2 cut(s)	187, 1002
BspPI	GGATC	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	354
BsrDI	GCAATG	3 cut(s)	457, 705, 757
BssMI	GATC	2 cut(s)	187, 1002
BssNAI	GTATAC	1 cut(s)	99
Bst1107I	GTATAC	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	185, 882
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	845
BstKTI	GATC	2 cut(s)	190, 1005
BstMAI	GTCTC	3 cut(s)	262, 354, 707
BstMBI	GATC	2 cut(s)	187, 1002
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	2 cut(s)	185, 882
BstPAI	GACNNNNGTC	1 cut(s)	945
BstSCI	CCNGG	3 cut(s)	183, 324, 880
BstSFI	CTRYAG	2 cut(s)	652, 785
BstSLI	GKGCMC	1 cut(s)	582
BstV1I	GCAGC	3 cut(s)	529, 628, 631
BstV2I	GAAGAC	2 cut(s)	203, 252
BstZ17I	GTATAC	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	773
Csp6I	GTAC	2 cut(s)	181, 657
CviAII	CATG	2 cut(s)	295, 431
CviJI	RGCY	8 cut(s)	314, 371, 386, 609, 622, 816, 844, 872
CviKI_1	RGCY	8 cut(s)	314, 371, 386, 609, 622, 816, 844, 872
CviQI	GTAC	2 cut(s)	181, 657
DdeI	CTNAG	1 cut(s)	845
DpnI	GATC	2 cut(s)	189, 1004
DpnII	GATC	2 cut(s)	187, 1002
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	773
Eco57I	CTGAAG	2 cut(s)	387, 852
EcoRI	GAATTC	1 cut(s)	744
EcoRII	CCWGG	2 cut(s)	183, 880
EcoT22I	ATGCAT	2 cut(s)	465, 589
FaeI	CATG	2 cut(s)	298, 434
FalI	AAGNNNNNCTT	4 cut(s)	125, 157, 360, 392
FatI	CATG	2 cut(s)	294, 430
FauNDI	CATATG	2 cut(s)	234, 483
FbaI	TGATCA	1 cut(s)	1002
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	4 cut(s)	15, 518, 617, 620
Fsp4HI	GCNGC	4 cut(s)	15, 518, 617, 620
FspBI	CTAG	3 cut(s)	27, 546, 624
GluI	GCNGC	4 cut(s)	15, 518, 617, 620
HapII	CCGG	1 cut(s)	326
Hin1II	CATG	2 cut(s)	298, 434
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	2 cut(s)	229, 979
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	4 cut(s)	99, 216, 275, 580
Hpy188I	TCNGA	2 cut(s)	283, 951
Hpy8I	GTNNAC	4 cut(s)	99, 216, 275, 580
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	1 cut(s)	656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	1 cut(s)	845
Hsp92II	CATG	2 cut(s)	298, 434
Ksp22I	TGATCA	1 cut(s)	1002
Kzo9I	GATC	2 cut(s)	187, 1002
LmnI	GCTCC	1 cut(s)	755
LpnPI	CCDG	8 cut(s)	170, 197, 295, 339, 773, 867, 894, 991
Lsp1109I	GCAGC	3 cut(s)	529, 628, 631
LweI	GCATC	2 cut(s)	472, 596
MaeI	CTAG	3 cut(s)	27, 546, 624
MaeIII	GTNAC	2 cut(s)	506, 523
MalI	GATC	2 cut(s)	189, 1004
MboI	GATC	2 cut(s)	187, 1002
MboII	GAAGA	4 cut(s)	208, 257, 257, 392
MhlI	GDGCHC	2 cut(s)	582, 760
MluCI	AATT	8 cut(s)	150, 341, 419, 601, 744, 850, 923, 998
MmeI	TCCRAC	1 cut(s)	951
MnlI	CCTC	6 cut(s)	25, 376, 498, 541, 606, 786
Mph1103I	ATGCAT	2 cut(s)	465, 589
MroXI	GAANNNNTTC	1 cut(s)	978
MseI	TTAA	2 cut(s)	117, 344
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	3 cut(s)	185, 326, 882
MvaI	CCWGG	2 cut(s)	185, 882
MwoI	GCNNNNNNNGC	1 cut(s)	493
NciI	CCSGG	1 cut(s)	326
NdeI	CATATG	2 cut(s)	234, 483
NdeII	GATC	2 cut(s)	187, 1002
NlaIII	CATG	2 cut(s)	298, 434
NsiI	ATGCAT	2 cut(s)	465, 589
PdmI	GAANNNNTTC	1 cut(s)	978
PfeI	GAWTC	2 cut(s)	229, 979
PkrI	GCNGC	4 cut(s)	16, 519, 618, 621
PshAI	GACNNNNGTC	1 cut(s)	945
Psp6I	CCWGG	2 cut(s)	183, 880
PspGI	CCWGG	2 cut(s)	183, 880
PspPI	GGNCC	1 cut(s)	773
RsaI	GTAC	2 cut(s)	182, 658
RsaNI	GTAC	2 cut(s)	181, 657
SaqAI	TTAA	2 cut(s)	117, 344
SatI	GCNGC	4 cut(s)	15, 518, 617, 620
Sau3AI	GATC	2 cut(s)	187, 1002
Sau96I	GGNCC	1 cut(s)	773
ScrFI	CCNGG	3 cut(s)	185, 326, 882
SduI	GDGCHC	2 cut(s)	582, 760
SfaNI	GCATC	2 cut(s)	472, 596
SfcI	CTRYAG	2 cut(s)	652, 785
SinI	GGWCC	1 cut(s)	773
Sse9I	AATT	8 cut(s)	150, 341, 419, 601, 744, 850, 923, 998
SspMI	CTAG	3 cut(s)	27, 546, 624
StyD4I	CCNGG	3 cut(s)	183, 324, 880
TaaI	ACNGT	1 cut(s)	656
TasI	AATT	8 cut(s)	150, 341, 419, 601, 744, 850, 923, 998
TfiI	GAWTC	2 cut(s)	229, 979
Tru1I	TTAA	2 cut(s)	117, 344
Tru9I	TTAA	2 cut(s)	117, 344
TseI	GCWGC	4 cut(s)	14, 517, 616, 619
TspDTI	ATGAA	5 cut(s)	153, 221, 258, 311, 470
VneI	GTGCAC	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	773
XapI	RAATTY	5 cut(s)	150, 419, 601, 744, 923
XmiI	GTMKAC	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	978
XspI	CTAG	3 cut(s)	27, 546, 624
Zsp2I	ATGCAT	2 cut(s)	465, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.