RLG00000030270
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001340
Physical Location & Seq
Reverse (-)
58728541 .. 58729032
492 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030270

Sequence Viewer

Length: 327 bp
ATGGAGTGTGAGGCTAAAGTTGGTGATACTTCTCAAGTTTGTGAGTCATTGCTGACAAATGTGTCGGAAAACATGGATTTCCCGCCCTCTTCTGAAGCTAAAATTGGTGATGCTTGTGAGGTTGGCGAGACGTTGAGGGAGGTTGTTCCTGGAAACATGGATTTGCATTTTGCAGCCATCTTCAACGGTGCAGGACCATCTTCAACAGTGCAGGAGTTGGAATCTGAAGCTAAATTTGGTGATGCTTCTCATATTTGTGAAACAGTGTTGGGATTTGTTCCTGAAAACATTGATCTGCGGCCATCTTCAACAGCGCTGGAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

109

Amino Acids

11.46

Weight (kDa)

4.07

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AciI CCGC 2 cut(s) 83, 298
AcoI YGGCCR 1 cut(s) 299
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 2 cut(s) 114, 246
AfeI AGCGCT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 184, 204, 309
AjnI CCWGG 1 cut(s) 148
AjuI GAANNNNNNNTTGG 4 cut(s) 87, 119, 219, 251
AluBI AGCT 2 cut(s) 98, 230
AluI AGCT 2 cut(s) 98, 230
Alw26I GTCTC 1 cut(s) 122
Aor51HI AGCGCT 1 cut(s) 315
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 3 cut(s) 35, 119, 251
AvaII GGWCC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 185
BccI CCATC 3 cut(s) 185, 205, 310
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 317
BisI GCNGC 2 cut(s) 174, 299
BlsI GCNGC 2 cut(s) 175, 300
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 100, 232
BpuEI CTTGAG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 185
BsgI GTGCAG 2 cut(s) 210, 230
BshFI GGCC 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 122
BsmBI CGTCTC 1 cut(s) 122
BsnI GGCC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 2 cut(s) 83, 298
BspANI GGCC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 47
BssMI GATC 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 188, 208, 265
Bst6I CTCTTC 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 292
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 213, 270
CfoI GCGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 194
CviAII CATG 2 cut(s) 73, 157
CviJI RGCY 5 cut(s) 14, 98, 176, 230, 301
CviKI_1 RGCY 5 cut(s) 14, 98, 176, 230, 301
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 194
Eco47III AGCGCT 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 114, 246
EcoRII CCWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 2 cut(s) 76, 160
FaiI YATR 3 cut(s) 74, 158, 252
FatI CATG 2 cut(s) 72, 156
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 174, 299
Fsp4HI GCNGC 2 cut(s) 174, 299
GlaI GCGC 1 cut(s) 315
GluI GCNGC 2 cut(s) 174, 299
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 1 cut(s) 301
HhaI GCGC 1 cut(s) 316
Hin1II CATG 2 cut(s) 76, 160
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 2 cut(s) 44, 221
HphI GGTGA 3 cut(s) 35, 119, 251
Hpy188I TCNGA 3 cut(s) 67, 94, 226
Hpy188III TCNNGA 1 cut(s) 281
HpyCH4III ACNGT 3 cut(s) 188, 208, 265
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 4 cut(s) 166, 173, 191, 211
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 2 cut(s) 76, 160
HspAI GCGC 1 cut(s) 314
Kzo9I GATC 1 cut(s) 292
LpnPI CCDG 6 cut(s) 135, 162, 177, 197, 294, 302
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 2 cut(s) 100, 232
MaeII ACGT 1 cut(s) 131
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 4 cut(s) 81, 172, 192, 297
MluCI AATT 2 cut(s) 102, 233
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 45, 198
MnlI CCTC 5 cut(s) 4, 97, 112, 129, 133
MslI CAYNNNNRTG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NdeII GATC 1 cut(s) 292
NlaIII CATG 2 cut(s) 76, 160
PfeI GAWTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 2 cut(s) 175, 300
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 255
SatI GCNGC 2 cut(s) 174, 299
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 150
SetI ASST 5 cut(s) 100, 123, 134, 144, 232
SfaNI GCATC 2 cut(s) 100, 232
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 2 cut(s) 102, 233
SsiI CCGC 2 cut(s) 83, 298
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 3 cut(s) 188, 208, 265
TaiI ACGT 1 cut(s) 134
TasI AATT 2 cut(s) 102, 233
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 1 cut(s) 221
TscAI CASTG 2 cut(s) 213, 270
TseI GCWGC 1 cut(s) 173
TspRI CASTG 2 cut(s) 213, 270
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.