Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001340

Physical Location & Seq

Genomic Coordinates Forward (+)

7063014 .. 7063425

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG036200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAACAAGTTCAAATGAGATGGCAATTTTTGTTACATAATGTTGAGTTGGAAGCAGCCAAGTTTCTGCACAGACTCATTCAAGGTTCTACTGATGAGCCGGCCAAACTTACCACCAAGCTCTATATGATATTGCAACACATGAAGTCGAGTGGCAAGAAAAAAATATATTATTTGTTTACTTCATTTGATTGTTTTGTTCTTTTGAACTTTCTGTTCCAGATTCAAATGGTTATGGTAGCTTTGATTAGATGTCAACGCTTCAGCCCGGATGCTTCAAACAATGAGAGTAATGTCTTTGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Helicase_C SNF2_N SnAC

Protein Analysis

103

Amino Acids

12.17

Weight (kDa)

8.64

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05651 FvH4_5g06481
malus_domestica	MD04G1150100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0366871 RchiOBHm_Chr2g0112811 RchiOBHm_Chr5g0022021 RchiOBHm_Chr5g0050161 RchiOBHm_Chr7g0178931
rosa_laevigata	RLG00000030270 RLG00000030274 RLG00000030285 RLG00000030289
rosa_multiflora	Rmu_sc0000206.1_g000011 Rmu_sc0000539.1_g000041 Rmu_sc0001706.1_g000020 Rmu_sc0002245.1_g000029 Rmu_sc0002935.1_g000016 Rmu_sc0002952.1_g000016 Rmu_sc0002952.1_g000017 Rmu_sc0003371.1_g000005 Rmu_sc0004193.1_g000005 Rmu_sc0004359.1_g000018 Rmu_sc0006422.1_g000014 Rmu_sc0007594.1_g000001 Rmu_sc0010925.1_g000018 Rmu_sc0013146.1_g000003 Rmu_sc0031630.1_g000002 Rmu_sc0033466.1_g000001 Rmu_ssc0000079.1_g000006 Rmu_ssc0000423.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004520 Rroxscaffold_1G00005520 Rroxscaffold_1G00041540 Rroxscaffold_1G00045310 Rroxscaffold_5G00361650 Rroxscaffold_6G00388920 Rroxscaffold_6G00405980 Rroxscaffold_6G00410140 Rroxscaffold_6G00423840 Rroxscaffold_7G00200050
rosa_rugosa	Rorug02G0433500 Rorug02G0433600 Rorug02G0433600 Rorug02G0433700 Rorug04G0166100.1 Rorug05G0053500 Rorug06G0481300
rosa_samantha	Rh1CG036200 Rh4AG051700 Rh4BG049000 Rh4CG055700
rosa_wichuraiana	Rw0G022690 Rw1G035930 Rw4G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	247
AgsI	TTSAA	5 cut(s)	14, 83, 208, 227, 279
AluBI	AGCT	2 cut(s)	121, 242
AluI	AGCT	2 cut(s)	121, 242
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	100
BseGI	GGATG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	101, 269
BsnI	GGCC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	100
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	6 cut(s)	59, 100, 104, 121, 242, 267
CviKI_1	RGCY	6 cut(s)	59, 100, 104, 121, 242, 267
EaeI	YGGCCR	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	247
FaeI	CATG	1 cut(s)	145
FaiI	YATR	6 cut(s)	39, 126, 128, 143, 169, 236
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	2 cut(s)	101, 269
Hin1II	CATG	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HinfI	GANTC	2 cut(s)	75, 223
HpaII	CCGG	2 cut(s)	101, 269
Hpy166II	GTNNAC	2 cut(s)	180, 257
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	2 cut(s)	180, 257
HpyCH4V	TGCA	2 cut(s)	70, 136
Hsp92II	CATG	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
LpnPI	CCDG	3 cut(s)	114, 233, 282
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	33
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	9
MspI	CCGG	2 cut(s)	101, 269
MspR9I	CCNGG	1 cut(s)	269
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	269
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	145
PdiI	GCCGGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
SatI	GCNGC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	3 cut(s)	88, 123, 244
SfaNI	GCATC	1 cut(s)	262
Sse9I	AATT	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	267
TaqI	TCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	158, 174
XmnI	GAANNNNTTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.