Rmu_sc0002935.1_g000016
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002935.1
OG0001340
Physical Location & Seq
Reverse (-)
81883 .. 82350
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002935.1_g000016.1.cds

Sequence Viewer

Length: 468 bp
atgattaaatttggtgctccagcagacattggtcagaatgtgactaagacaagctctgaaacattggttggaatggattctaggcttccattacaaattgatcaggcaatgatatacttggagaaggtagaaaagaaggatgaacttggagttaatgtcatattggctgctaagacaggaaatgaaggtacaatgaaacaatatgaagaacttgaagtttcctctattcttaacactacaaatggtcttgctactatcgatagtgtgattaattcgaagaagggaaatatcagcaaaggtgatgattttcatattgtttcaagtagtgatcaaatgaagcactttacttcactgtctggaagcataagaccaatggttagagtcaagcaaggagagcaacagttaatagaaagccaaatggatttggtcaacactggcaacttggtatctcaggcaatggagctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

155

Amino Acids

16.89

Weight (kDa)

5.02

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 1 cut(s) 190
AgsI TTSAA 2 cut(s) 215, 321
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 2 cut(s) 54, 463
AluI AGCT 2 cut(s) 54, 463
Alw21I GWGCWC 2 cut(s) 19, 465
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 8
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 311
AsuII TTCGAA 1 cut(s) 275
BanII GRGCYC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 19, 465
BbvI GCAGC 1 cut(s) 154
BclI TGATCA 2 cut(s) 100, 328
BfaI CTAG 2 cut(s) 81, 466
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BoxI GACNNNNGTC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 275
Bsa29I ATCGAT 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 2 cut(s) 114, 462
BseCI ATCGAT 1 cut(s) 258
BseGI GGATG 1 cut(s) 145
BseMI GCAATG 2 cut(s) 114, 462
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 1 cut(s) 439
BseXI GCAGC 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 19, 465
Bsp119I TTCGAA 1 cut(s) 275
Bsp1286I GDGCHC 2 cut(s) 19, 465
Bsp143I GATC 2 cut(s) 100, 328
BspCNI CTCAG 1 cut(s) 463
BspDI ATCGAT 1 cut(s) 258
BspT104I TTCGAA 1 cut(s) 275
BsrDI GCAATG 2 cut(s) 114, 462
BsrI ACTGG 1 cut(s) 439
BssMI GATC 2 cut(s) 100, 328
Bst4CI ACNGT 2 cut(s) 354, 402
BstBI TTCGAA 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 45, 171, 450
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 103, 331
BstMBI GATC 2 cut(s) 100, 328
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstPAI GACNNNNGTC 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 258
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 350, 432
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 189
CviJI RGCY 5 cut(s) 54, 85, 167, 414, 463
CviKI_1 RGCY 5 cut(s) 54, 85, 167, 414, 463
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 3 cut(s) 45, 171, 450
DpnI GATC 2 cut(s) 102, 330
DpnII GATC 2 cut(s) 100, 328
Ecl136II GAGCTC 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 465
Eco53kI GAGCTC 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 463
EcoT38I GRGCYC 1 cut(s) 465
FaiI YATR 5 cut(s) 115, 161, 204, 312, 365
FbaI TGATCA 2 cut(s) 100, 328
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 81, 466
GluI GCNGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 2 cut(s) 77, 381
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 2 cut(s) 36, 58
Hpy188III TCNNGA 1 cut(s) 357
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 4 cut(s) 118, 130, 179, 274
HpyCH4III ACNGT 2 cut(s) 354, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
HpyF3I CTNAG 3 cut(s) 45, 171, 450
Ksp22I TGATCA 2 cut(s) 100, 328
Kzo9I GATC 2 cut(s) 100, 328
LmnI GCTCC 2 cut(s) 22, 460
LpnPI CCDG 6 cut(s) 33, 89, 162, 342, 420, 437
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 2 cut(s) 81, 466
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 102, 330
MboI GATC 2 cut(s) 100, 328
MboII GAAGA 2 cut(s) 218, 289
MhlI GDGCHC 2 cut(s) 19, 465
MluCI AATT 3 cut(s) 8, 96, 271
MlyI GAGTC 1 cut(s) 390
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 76
MseI TTAA 5 cut(s) 6, 153, 231, 270, 404
MwoI GCNNNNNNNGC 1 cut(s) 394
NdeII GATC 2 cut(s) 100, 328
NmuCI GTSAC 1 cut(s) 40
NspV TTCGAA 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
PshAI GACNNNNGTC 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 465
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SacI GAGCTC 1 cut(s) 465
SaqAI TTAA 5 cut(s) 6, 153, 231, 270, 404
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 2 cut(s) 100, 328
SchI GAGTC 1 cut(s) 390
SduI GDGCHC 2 cut(s) 19, 465
SetI ASST 5 cut(s) 56, 129, 190, 301, 465
SfuI TTCGAA 1 cut(s) 275
Sse9I AATT 3 cut(s) 8, 96, 271
SspMI CTAG 2 cut(s) 81, 466
SstI GAGCTC 1 cut(s) 465
TaaI ACNGT 2 cut(s) 354, 402
TaqI TCGA 2 cut(s) 258, 275
TasI AATT 3 cut(s) 8, 96, 271
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 5 cut(s) 6, 153, 231, 270, 404
Tru9I TTAA 5 cut(s) 6, 153, 231, 270, 404
TscAI CASTG 2 cut(s) 357, 439
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 6 cut(s) 156, 198, 209, 219, 299, 350
TspRI CASTG 2 cut(s) 357, 439
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 2 cut(s) 81, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.