RchiOBHm_Chr5g0050161
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001340
Physical Location & Seq
Forward (+)
48686111 .. 48687144
1034 bp
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UTR
Exon/CDS
Intron
PRQ32778

Sequence Viewer

Length: 573 bp
ATGACTAAATTTGGTGCTCTAGTAGACATTGGTCGGAATGTAAATGAGAAAAAATCTGAAACATTGGTTGGAATGGATTCTAAGCTTCAATTACAAATTGATCAGGCAATGATAGACTTGGATAAGGCAAAAAAGGAGGATGAACTTGGAGTAAATGTCATATTGGCTGCTAAGATAGGAAATGAAGGTACAATGGAACAACCTGAACAACTTGAAGTTTCCTCTATTCTTAACACTACAAATGGTCTTGCTACTATAGGTAGTGTGATTAACTCGAGGAAGGGAAAGATGAGCAAAGGTGATGGTGGCAATGCTAATTTTCATATTGTTTCTAGTAGTAGTGATCAAATGAAGCACTCTACTTCACTCTCAGCTGGAAGCATGAGACCAATGGTTAGAGTCAAGCAAGAAAGGCAACATTTAATAGAAAGCCAACTGGATTTGACCAACAGTAGTAGCAGTTTGGTGTCTCAAGCAATGGAGCTCAAGAAAGTCAAAACTATGATGAATTGTAGGAGAGCTTGTCAACCAATGGAGTTATGGCCATCACTTCCTCTTCTTCCTCCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

190

Amino Acids

20.68

Weight (kDa)

8.53

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Enolase_N PF03952 12 - 57 2.3e-08 Enolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 542
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 1 cut(s) 190
AgsI TTSAA 2 cut(s) 89, 215
AjnI CCWGG 1 cut(s) 565
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 4 cut(s) 85, 374, 484, 521
AluI AGCT 4 cut(s) 85, 374, 484, 521
Alw21I GWGCWC 2 cut(s) 19, 486
Alw26I GTCTC 2 cut(s) 379, 474
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 1 cut(s) 542
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 311
AvaI CYCGRG 1 cut(s) 274
BalI TGGCCA 1 cut(s) 544
BanII GRGCYC 1 cut(s) 486
Bbv12I GWGCWC 2 cut(s) 19, 486
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 296, 553
BciT130I CCWGG 1 cut(s) 567
BclI TGATCA 2 cut(s) 100, 343
BcoDI GTCTC 2 cut(s) 379, 474
BfaI CTAG 2 cut(s) 20, 333
BfmI CTRYAG 1 cut(s) 255
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 567
BoxI GACNNNNGTC 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 456, 470
BsaI GGTCTC 1 cut(s) 379
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 508, 538
Bse1I ACTGG 1 cut(s) 441
Bse3DI GCAATG 3 cut(s) 114, 316, 483
BseBI CCWGG 1 cut(s) 567
BseGI GGATG 1 cut(s) 145
BseMI GCAATG 3 cut(s) 114, 316, 483
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 441
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 544
BsiHKAI GWGCWC 2 cut(s) 19, 486
BsiHKCI CYCGRG 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 379, 474
BsnI GGCC 1 cut(s) 544
Bso31I GGTCTC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 19, 486
Bsp143I GATC 2 cut(s) 100, 343
BspANI GGCC 1 cut(s) 544
BspCNI CTCAG 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 379
BsrDI GCAATG 3 cut(s) 114, 316, 483
BsrI ACTGG 1 cut(s) 441
BssMI GATC 2 cut(s) 100, 343
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 561
BstDEI CTNAG 3 cut(s) 81, 171, 370
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 103, 346
BstMAI GTCTC 2 cut(s) 379, 474
BstMBI GATC 2 cut(s) 100, 343
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 567
BstPAI GACNNNNGTC 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 544
BtsCI GGATG 1 cut(s) 145
Csp6I GTAC 1 cut(s) 189
CviAII CATG 1 cut(s) 382
CviJI RGCY 7 cut(s) 85, 167, 374, 432, 484, 521, 544
CviKI_1 RGCY 7 cut(s) 85, 167, 374, 432, 484, 521, 544
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 3 cut(s) 81, 171, 370
DpnI GATC 2 cut(s) 102, 345
DpnII GATC 2 cut(s) 100, 343
EaeI YGGCCR 1 cut(s) 542
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 486
FaeI CATG 1 cut(s) 385
FaiI YATR 6 cut(s) 161, 257, 324, 383, 503, 541
FatI CATG 1 cut(s) 381
FbaI TGATCA 2 cut(s) 100, 343
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 20, 333
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 544
Hin1II CATG 1 cut(s) 385
HincII GTYRAC 1 cut(s) 527
HindII GTYRAC 1 cut(s) 527
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 2 cut(s) 77, 399
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 25, 527
Hpy188I TCNGA 2 cut(s) 36, 58
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 2 cut(s) 25, 527
HpyAV CCTTC 2 cut(s) 179, 274
HpyCH4III ACNGT 1 cut(s) 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 3 cut(s) 81, 171, 370
Hsp92II CATG 1 cut(s) 385
Ksp22I TGATCA 2 cut(s) 100, 343
Kzo9I GATC 2 cut(s) 100, 343
LmnI GCTCC 1 cut(s) 481
LpnPI CCDG 5 cut(s) 89, 216, 360, 422, 552
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 2 cut(s) 20, 333
MalI GATC 2 cut(s) 102, 345
MboI GATC 2 cut(s) 100, 343
MboII GAAGA 2 cut(s) 548, 551
MhlI GDGCHC 2 cut(s) 19, 486
MlsI TGGCCA 1 cut(s) 544
MluCI AATT 5 cut(s) 8, 89, 96, 316, 508
MluNI TGGCCA 1 cut(s) 544
MlyI GAGTC 1 cut(s) 408
MmeI TCCRAC 2 cut(s) 14, 49
MnlI CCTC 5 cut(s) 130, 232, 270, 564, 573
Mox20I TGGCCA 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 76
MscI TGGCCA 1 cut(s) 544
MseI TTAA 4 cut(s) 231, 270, 422, 571
Msp20I TGGCCA 1 cut(s) 544
MspA1I CMGCKG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 1 cut(s) 412
NdeII GATC 2 cut(s) 100, 343
NlaIII CATG 1 cut(s) 385
PaeR7I CTCGAG 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
PshAI GACNNNNGTC 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PspXI VCTCGAGB 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 4 cut(s) 231, 270, 422, 571
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 2 cut(s) 100, 343
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 2 cut(s) 19, 486
SetI ASST 8 cut(s) 87, 190, 205, 262, 301, 376, 486, 523
SfcI CTRYAG 1 cut(s) 255
Sfr274I CTCGAG 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 274
SmlI CTYRAG 3 cut(s) 274, 471, 485
SmoI CTYRAG 3 cut(s) 274, 471, 485
Sse9I AATT 5 cut(s) 8, 89, 96, 316, 508
SspMI CTAG 2 cut(s) 20, 333
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 565
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 1 cut(s) 275
TasI AATT 5 cut(s) 8, 89, 96, 316, 508
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 4 cut(s) 231, 270, 422, 571
Tru9I TTAA 4 cut(s) 231, 270, 422, 571
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 5 cut(s) 156, 198, 311, 365, 521
XapI RAATTY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 537
XhoI CTCGAG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 2 cut(s) 20, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.