gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 584 |
| AclWI | GGATC | 1 cut(s) | 779 |
| AcsI | RAATTY | 3 cut(s) | 303, 715, 852 |
| AcuI | CTGAAG | 1 cut(s) | 462 |
| AfaI | GTAC | 2 cut(s) | 257, 810 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 384 |
| AgsI | TTSAA | 8 cut(s) | 230, 357, 408, 455, 611, 796, 862, 874 |
| AhlI | ACTAGT | 1 cut(s) | 590 |
| AjnI | CCWGG | 1 cut(s) | 1123 |
| AluBI | AGCT | 5 cut(s) | 278, 446, 461, 950, 1016 |
| AluI | AGCT | 5 cut(s) | 278, 446, 461, 950, 1016 |
| Alw26I | GTCTC | 2 cut(s) | 25, 908 |
| AlwI | GGATC | 1 cut(s) | 779 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1108 |
| AoxI | GGCC | 1 cut(s) | 387 |
| ApeKI | GCWGC | 3 cut(s) | 728, 947, 1016 |
| ApoI | RAATTY | 3 cut(s) | 303, 715, 852 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 886, 918 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 957 |
| AspS9I | GGNCC | 1 cut(s) | 387 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 891, 923 |
| BbsI | GAAGAC | 1 cut(s) | 327 |
| BbvI | GCAGC | 3 cut(s) | 715, 959, 1003 |
| BccI | CCATC | 2 cut(s) | 25, 785 |
| BciT130I | CCWGG | 1 cut(s) | 1125 |
| BclI | TGATCA | 2 cut(s) | 283, 1057 |
| BcoDI | GTCTC | 2 cut(s) | 25, 908 |
| BcuI | ACTAGT | 1 cut(s) | 590 |
| BfaI | CTAG | 3 cut(s) | 141, 591, 1065 |
| BfmI | CTRYAG | 1 cut(s) | 1011 |
| BisI | GCNGC | 3 cut(s) | 729, 948, 1017 |
| BlsI | GCNGC | 3 cut(s) | 730, 949, 1018 |
| BmcAI | AGTACT | 1 cut(s) | 257 |
| Bme1390I | CCNGG | 1 cut(s) | 1125 |
| BmgT120I | GGNCC | 1 cut(s) | 387 |
| BmrFI | CCNGG | 1 cut(s) | 1125 |
| BmsI | GCATC | 3 cut(s) | 556, 646, 707 |
| BpiI | GAAGAC | 1 cut(s) | 327 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 643, 675 |
| BpuEI | CTTGAG | 1 cut(s) | 146 |
| BsaI | GGTCTC | 1 cut(s) | 908 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 384 |
| Bse1I | ACTGG | 1 cut(s) | 102 |
| Bse3DI | GCAATG | 2 cut(s) | 435, 967 |
| BseBI | CCWGG | 1 cut(s) | 1125 |
| BseGI | GGATG | 4 cut(s) | 23, 661, 1033, 1075 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 384 |
| BseMI | GCAATG | 2 cut(s) | 435, 967 |
| BseMII | CTCAG | 1 cut(s) | 1115 |
| BseNI | ACTGG | 1 cut(s) | 102 |
| BseXI | GCAGC | 3 cut(s) | 715, 959, 1003 |
| BsgI | GTGCAG | 1 cut(s) | 519 |
| BshFI | GGCC | 1 cut(s) | 389 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 384 |
| BsmAI | GTCTC | 2 cut(s) | 25, 908 |
| BsmI | GAATGC | 3 cut(s) | 481, 869, 959 |
| BsnI | GGCC | 1 cut(s) | 389 |
| Bso31I | GGTCTC | 1 cut(s) | 908 |
| Bsp1407I | TGTACA | 1 cut(s) | 808 |
| Bsp143I | GATC | 4 cut(s) | 262, 283, 784, 1057 |
| BspANI | GGCC | 1 cut(s) | 389 |
| BspCNI | CTCAG | 1 cut(s) | 1114 |
| BspHI | TCATGA | 1 cut(s) | 1087 |
| BspPI | GGATC | 1 cut(s) | 779 |
| BspTNI | GGTCTC | 1 cut(s) | 908 |
| BsrDI | GCAATG | 2 cut(s) | 435, 967 |
| BsrGI | TGTACA | 1 cut(s) | 808 |
| BsrI | ACTGG | 1 cut(s) | 102 |
| BssMI | GATC | 4 cut(s) | 262, 283, 784, 1057 |
| Bst2UI | CCWGG | 1 cut(s) | 1125 |
| Bst4CI | ACNGT | 3 cut(s) | 337, 624, 739 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 772 |
| BstAUI | TGTACA | 1 cut(s) | 808 |
| BstDEI | CTNAG | 2 cut(s) | 259, 1101 |
| BstF5I | GGATG | 4 cut(s) | 23, 661, 1033, 1075 |
| BstKTI | GATC | 4 cut(s) | 265, 286, 787, 1060 |
| BstMAI | GTCTC | 2 cut(s) | 25, 908 |
| BstMBI | GATC | 4 cut(s) | 262, 283, 784, 1057 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 665, 772 |
| BstNI | CCWGG | 1 cut(s) | 1125 |
| BstSCI | CCNGG | 1 cut(s) | 1123 |
| BstSFI | CTRYAG | 1 cut(s) | 1011 |
| BstV1I | GCAGC | 3 cut(s) | 715, 959, 1003 |
| BstV2I | GAAGAC | 1 cut(s) | 327 |
| BsuRI | GGCC | 1 cut(s) | 389 |
| BtsCI | GGATG | 4 cut(s) | 23, 661, 1033, 1075 |
| BtsI | GCAGTG | 1 cut(s) | 693 |
| BtsIMutI | CAGTG | 4 cut(s) | 109, 333, 615, 693 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1108 |
| CciI | TCATGA | 1 cut(s) | 1087 |
| Cfr13I | GGNCC | 1 cut(s) | 387 |
| Csp6I | GTAC | 2 cut(s) | 256, 809 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 829, 864 |
| CviAII | CATG | 5 cut(s) | 186, 391, 506, 914, 1088 |
| CviQI | GTAC | 2 cut(s) | 256, 809 |
| DdeI | CTNAG | 2 cut(s) | 259, 1101 |
| DpnI | GATC | 4 cut(s) | 264, 285, 786, 1059 |
| DpnII | GATC | 4 cut(s) | 262, 283, 784, 1057 |
| Eco31I | GGTCTC | 1 cut(s) | 908 |
| Eco57I | CTGAAG | 1 cut(s) | 462 |
| EcoRI | GAATTC | 3 cut(s) | 303, 715, 852 |
| EcoRII | CCWGG | 1 cut(s) | 1123 |
| EcoT22I | ATGCAT | 1 cut(s) | 396 |
| FaeI | CATG | 5 cut(s) | 189, 394, 509, 917, 1091 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 121, 153, 200, 232, 435, 467 |
| FatI | CATG | 5 cut(s) | 185, 390, 505, 913, 1087 |
| FauNDI | CATATG | 2 cut(s) | 309, 724 |
| FbaI | TGATCA | 2 cut(s) | 283, 1057 |
| FblI | GTMKAC | 1 cut(s) | 584 |
| Fnu4HI | GCNGC | 3 cut(s) | 729, 948, 1017 |
| FokI | GGATG | 4 cut(s) | 10, 668, 1020, 1062 |
| Fsp4HI | GCNGC | 3 cut(s) | 729, 948, 1017 |
| FspBI | CTAG | 3 cut(s) | 141, 591, 1065 |
| GluI | GCNGC | 3 cut(s) | 729, 948, 1017 |
| HaeIII | GGCC | 1 cut(s) | 389 |
| Hin1II | CATG | 5 cut(s) | 189, 394, 509, 917, 1091 |
| HinfI | GANTC | 4 cut(s) | 242, 424, 541, 681 |
| Hpy166II | GTNNAC | 1 cut(s) | 585 |
| Hpy188I | TCNGA | 2 cut(s) | 241, 521 |
| Hpy188III | TCNNGA | 2 cut(s) | 141, 1088 |
| Hpy8I | GTNNAC | 1 cut(s) | 585 |
| HpyAV | CCTTC | 4 cut(s) | 5, 363, 893, 929 |
| HpyCH4III | ACNGT | 3 cut(s) | 337, 624, 739 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 665, 772 |
| HpyF3I | CTNAG | 2 cut(s) | 259, 1101 |
| Hsp92II | CATG | 5 cut(s) | 189, 394, 509, 917, 1091 |
| Ksp22I | TGATCA | 2 cut(s) | 283, 1057 |
| Kzo9I | GATC | 4 cut(s) | 262, 283, 784, 1057 |
| LmnI | GCTCC | 1 cut(s) | 664 |
| LpnPI | CCDG | 7 cut(s) | 41, 115, 370, 451, 546, 864, 1110 |
| Lsp1109I | GCAGC | 3 cut(s) | 715, 959, 1003 |
| LweI | GCATC | 3 cut(s) | 556, 646, 707 |
| MaeI | CTAG | 3 cut(s) | 141, 591, 1065 |
| MaeIII | GTNAC | 4 cut(s) | 526, 547, 691, 1104 |
| MalI | GATC | 4 cut(s) | 264, 285, 786, 1059 |
| MboI | GATC | 4 cut(s) | 262, 283, 784, 1057 |
| MboII | GAAGA | 8 cut(s) | 20, 283, 332, 332, 467, 591, 594, 833 |
| MfeI | CAATTG | 1 cut(s) | 287 |
| MlyI | GAGTC | 2 cut(s) | 418, 535 |
| MmeI | TCCRAC | 3 cut(s) | 106, 808, 1006 |
| MnlI | CCTC | 6 cut(s) | 162, 515, 645, 1014, 1122, 1131 |
| Mph1103I | ATGCAT | 1 cut(s) | 396 |
| MroXI | GAANNNNTTC | 1 cut(s) | 957 |
| MseI | TTAA | 5 cut(s) | 39, 192, 206, 249, 419 |
| MslI | CAYNNNNRTG | 3 cut(s) | 894, 972, 1092 |
| MspA1I | CMGCKG | 1 cut(s) | 950 |
| MspR9I | CCNGG | 1 cut(s) | 1125 |
| MunI | CAATTG | 1 cut(s) | 287 |
| Mva1269I | GAATGC | 3 cut(s) | 481, 869, 959 |
| MvaI | CCWGG | 1 cut(s) | 1125 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 665, 772 |
| NdeI | CATATG | 2 cut(s) | 309, 724 |
| NdeII | GATC | 4 cut(s) | 262, 283, 784, 1057 |
| NlaIII | CATG | 5 cut(s) | 189, 394, 509, 917, 1091 |
| NmuCI | GTSAC | 1 cut(s) | 691 |
| NsiI | ATGCAT | 1 cut(s) | 396 |
| PagI | TCATGA | 1 cut(s) | 1087 |
| PctI | GAATGC | 3 cut(s) | 481, 869, 959 |
| PdmI | GAANNNNTTC | 1 cut(s) | 957 |
| PfeI | GAWTC | 2 cut(s) | 242, 681 |
| PkrI | GCNGC | 3 cut(s) | 730, 949, 1018 |
| PleI | GAGTC | 2 cut(s) | 418, 535 |
| PpsI | GAGTC | 2 cut(s) | 418, 535 |
| Psp6I | CCWGG | 1 cut(s) | 1123 |
| PspGI | CCWGG | 1 cut(s) | 1123 |
| PspPI | GGNCC | 1 cut(s) | 387 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1108 |
| PvuII | CAGCTG | 1 cut(s) | 950 |
| RsaI | GTAC | 2 cut(s) | 257, 810 |
| RsaNI | GTAC | 2 cut(s) | 256, 809 |
| RseI | CAYNNNNRTG | 3 cut(s) | 894, 972, 1092 |
| SaqAI | TTAA | 5 cut(s) | 39, 192, 206, 249, 419 |
| SatI | GCNGC | 3 cut(s) | 729, 948, 1017 |
| Sau3AI | GATC | 4 cut(s) | 262, 283, 784, 1057 |
| Sau96I | GGNCC | 1 cut(s) | 387 |
| ScaI | AGTACT | 1 cut(s) | 257 |
| SchI | GAGTC | 2 cut(s) | 418, 535 |
| ScrFI | CCNGG | 1 cut(s) | 1125 |
| SfaNI | GCATC | 3 cut(s) | 556, 646, 707 |
| SfcI | CTRYAG | 1 cut(s) | 1011 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 894, 972, 1092 |
| SmlI | CTYRAG | 1 cut(s) | 161 |
| SmoI | CTYRAG | 1 cut(s) | 161 |
| SpeI | ACTAGT | 1 cut(s) | 590 |
| SspMI | CTAG | 3 cut(s) | 141, 591, 1065 |
| StyD4I | CCNGG | 1 cut(s) | 1123 |
| TaaI | ACNGT | 3 cut(s) | 337, 624, 739 |
| TaqI | TCGA | 1 cut(s) | 265 |
| TatI | WGTACW | 2 cut(s) | 255, 808 |
| TfiI | GAWTC | 2 cut(s) | 242, 681 |
| Tru1I | TTAA | 5 cut(s) | 39, 192, 206, 249, 419 |
| Tru9I | TTAA | 5 cut(s) | 39, 192, 206, 249, 419 |
| TscAI | CASTG | 4 cut(s) | 109, 340, 622, 700 |
| TseFI | GTSAC | 1 cut(s) | 691 |
| TseI | GCWGC | 3 cut(s) | 728, 947, 1016 |
| Tsp45I | GTSAC | 1 cut(s) | 691 |
| TspRI | CASTG | 4 cut(s) | 109, 340, 622, 700 |
| XapI | RAATTY | 3 cut(s) | 303, 715, 852 |
| XbaI | TCTAGA | 1 cut(s) | 140 |
| XmiI | GTMKAC | 1 cut(s) | 584 |
| XmnI | GAANNNNTTC | 1 cut(s) | 957 |
| XspI | CTAG | 3 cut(s) | 141, 591, 1065 |
| ZrmI | AGTACT | 1 cut(s) | 257 |
| Zsp2I | ATGCAT | 1 cut(s) | 396 |