Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001340

Physical Location & Seq

Genomic Coordinates Reverse (-)

28416391 .. 28419425

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGAACAAGTTCAAATGAGATGGCAATTTTTGTTACATAATGTTGAGTTGGAAGCAACCAAGTTTCTGCACAGACTCATTCAAGGTTCTACTGATGAGCCGGCCAAACTTACCACCAAGCTCTATGTGATTCAAATGGTTATGGTAGCTTTGATTAGATGTCCACGCTTCAGCCCCGATGCTTCAAACAATGAGAGTAATGTCTTTGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Helicase_C SNF2_N SnAC

Protein Analysis

72

Amino Acids

8.39

Weight (kDa)

6.03

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05651 FvH4_5g06481
malus_domestica	MD04G1150100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0366871 RchiOBHm_Chr2g0112811 RchiOBHm_Chr5g0022021 RchiOBHm_Chr5g0050161 RchiOBHm_Chr7g0178931
rosa_laevigata	RLG00000030270 RLG00000030274 RLG00000030285 RLG00000030289
rosa_multiflora	Rmu_sc0000206.1_g000011 Rmu_sc0000539.1_g000041 Rmu_sc0001706.1_g000020 Rmu_sc0002245.1_g000029 Rmu_sc0002935.1_g000016 Rmu_sc0002952.1_g000016 Rmu_sc0002952.1_g000017 Rmu_sc0003371.1_g000005 Rmu_sc0004193.1_g000005 Rmu_sc0004359.1_g000018 Rmu_sc0006422.1_g000014 Rmu_sc0007594.1_g000001 Rmu_sc0010925.1_g000018 Rmu_sc0013146.1_g000003 Rmu_sc0031630.1_g000002 Rmu_sc0033466.1_g000001 Rmu_ssc0000079.1_g000006 Rmu_ssc0000423.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004520 Rroxscaffold_1G00005520 Rroxscaffold_1G00041540 Rroxscaffold_1G00045310 Rroxscaffold_5G00361650 Rroxscaffold_6G00388920 Rroxscaffold_6G00405980 Rroxscaffold_6G00410140 Rroxscaffold_6G00423840 Rroxscaffold_7G00200050
rosa_rugosa	Rorug02G0433500 Rorug02G0433600 Rorug02G0433600 Rorug02G0433700 Rorug04G0166100.1 Rorug05G0053500 Rorug06G0481300
rosa_samantha	Rh1CG036200 Rh4AG051700 Rh4BG049000 Rh4CG055700
rosa_wichuraiana	Rw0G022690 Rw1G035930 Rw4G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	154
AgsI	TTSAA	4 cut(s)	14, 83, 134, 186
AluBI	AGCT	2 cut(s)	121, 149
AluI	AGCT	2 cut(s)	121, 149
AoxI	GGCC	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	9
BccI	CCATC	1 cut(s)	15
BmsI	GCATC	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	101
BsnI	GGCC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	100
CviJI	RGCY	5 cut(s)	100, 104, 121, 149, 174
CviKI_1	RGCY	5 cut(s)	100, 104, 121, 149, 174
EaeI	YGGCCR	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	154
FaiI	YATR	3 cut(s)	39, 126, 143
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	101
HinfI	GANTC	2 cut(s)	75, 130
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
LpnPI	CCDG	1 cut(s)	114
LweI	GCATC	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	33
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	9
MspI	CCGG	1 cut(s)	101
NaeI	GCCGGC	1 cut(s)	102
NgoMIV	GCCGGC	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	69
SetI	ASST	3 cut(s)	88, 123, 151
SfaNI	GCATC	1 cut(s)	169
SgeI	CNNG	7 cut(s)	20, 73, 95, 113, 130, 177, 188
Sse9I	AATT	1 cut(s)	26
TasI	AATT	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.